Pairwise Alignments

Query, 556 a.a., putative sensory box histidine kinase/response regulator from Pseudomonas putida KT2440

Subject, 1390 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  137 bits (346), Expect = 2e-36
 Identities = 131/464 (28%), Positives = 223/464 (48%), Gaps = 40/464 (8%)

Query: 69   NPALARMLGYDDPQAVLFSLTDLAANLFDGGAEELQAITAVLAREHSL-HGYETRLR--- 124
            N     + GYD+ +A+   +  L         ++ QA      R+H+L HG  +  R   
Sbjct: 914  NRGAQTLFGYDEQEAIGQCIDMLYTE------QDRQAGVPETERKHALEHGQASDERWHL 967

Query: 125  RKDGSH--LDVLMNLLLKPGHEGLVEGFVADITERKLAQQRLQQLNDELEQRVAARTDEL 182
            R+DGS      L+N L+    EG V G        K+A+   ++     EQ+     +EL
Sbjct: 968  RRDGSQRFFSGLVNPLVDS--EGKVIGLA------KIARDLTEERKQSSEQQ-----NEL 1014

Query: 183  LEARDAAEAANRSKDKYLAAASHDLLQPLNAARLLISTLRERPLPEAEHVLVERTH---Q 239
                +  +AAN  KD++ A  SH+L  PLN  +L    L   P  +    L + T     
Sbjct: 1015 ----ETIQAANLQKDQFFAVLSHELKHPLNLIQLNTDLLARSPAAKTSPSLRKATQAIQN 1070

Query: 240  ALEGAEDLLTDLLDISRLDQAAVKPDVAVYRLDELFAPLVSEFSPVAEAAGLKLHARIAD 299
            A+     ++ DL+D+SR+    +K   A  R  ++   + + F P+A+A  +   A   D
Sbjct: 1071 AVRSQSRIIDDLMDVSRIRTGKLKLHFATLRYQDVLRGIEAVFEPLAQAENVVFEAFKPD 1130

Query: 300  YAI--STDLRLLTRILRNFLSNACRYTEEG-RILLGARRRGGHLRLEVWDTGRGIAQDRL 356
              I    D   L +I+ N L+NA ++T+ G RI +  +R G   RL+V DTG+GI+ D L
Sbjct: 1131 EPIYIQADPTRLDQIIWNLLNNAWKFTKGGERICMQLKRDGDQARLDVIDTGQGISADFL 1190

Query: 357  QDIFLEFNQLDVGRAADRK-GVGLGLAIVERIAKILGYRIEVRS-WLGRGSVFSIEVPLG 414
              +F  F Q ++  A   K G+G+GLA+V+++ +     IE  S  +GRG+ FS+ +P+ 
Sbjct: 1191 PKVFDMFGQAEMHHAQRTKHGLGIGLALVKQLVEAHNGHIEAYSEGIGRGARFSVWLPIH 1250

Query: 415  KEVPLAVHQAVPLPSVGDPLPGRRLLVLDNEVSILESMGALLGQWGCEVVTATDREGALL 474
             +  + +++      +G  L G R+L++D+   ILE+M  LL   G  V TA      + 
Sbjct: 1251 LQTEMELNELQNGAELGG-LTGIRILLVDDSPDILETMCELLESEGANVTTADGGAQGIE 1309

Query: 475  ALQGRAPELILADYHLDHGVVGCEVVRYLREHFATA-IPAVIIT 517
              +    ++I++D  +     G +++  +R H A    P++ +T
Sbjct: 1310 LAEQTPFDVIVSDIGMP-DTDGHKMMSIIRNHGANMHTPSIALT 1352