Pairwise Alignments

Query, 309 a.a., Universal stress protein family from Pseudomonas putida KT2440

Subject, 310 a.a., universal stress protein family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 64.3 bits (155), Expect = 3e-15
 Identities = 68/301 (22%), Positives = 131/301 (43%), Gaps = 18/301 (5%)

Query: 19  MNPLKHILVATDLSPHARNAAERAAYLSDAQQASLDLLYVANPAPFERLKQLVTPDDDLL 78
           M   + ILV  D +   + A  RA  L+    A + +        +E    L + + + +
Sbjct: 1   MKDYQKILVVVDPTTENQVALARAVTLASKSNAHVTVFLSIFDFSYEMTSILSSQEREAM 60

Query: 79  KR-VLDSAGEKTHALAALLFQRYGISAGVQVASGSVITE--INRVVQDKHSDLLVCGARG 135
           ++ V+D        L A  +   G++   QV   +   E  IN  +  ++ DL+V G   
Sbjct: 61  RQGVIDQRVAWIQDLLAP-YNHLGLNIDTQVIWHNRPFESIINHAIAGQY-DLIVKGTHA 118

Query: 136 QSVARRLLLGSTVQKLLNRMPCPLLVVKPAPRDAYRTVLVPV-------DFSSVSLRTIE 188
               + ++   T   L+ + P P+L+VK         +L  V       D   ++ + IE
Sbjct: 119 HDKLKAVIFTPTDWHLMRKAPVPVLMVKDHDWPETGKILCAVNVATEDTDHQMLNGKIIE 178

Query: 189 LAKAIAPQ--AEIILLHAYEA-PFEASVRFAHLDHDTLTHYRNVIRKDAQVQLAALSEAA 245
            AK +A +  AE+ L++ +   P   ++     D  T   Y + IR   + ++  L++A 
Sbjct: 179 HAKDLAGKFAAEVHLVNGFPGTPVNLAIELPDFDAQT---YNDTIRLQHEQRVQYLADAY 235

Query: 246 GLADARQILVHGDPGWRIAEQEQELECDLIVVGKQGASALEELLVGSVTKHVLNESQCDV 305
           G+      +  G P   I E  ++L+ +L+++G  G +     L+G+  +HV++   CD+
Sbjct: 236 GIDKQNCHVKEGLPEDVIPELAEQLDAELVILGTVGRTGFSAALIGNTAEHVIDSINCDL 295

Query: 306 L 306
           L
Sbjct: 296 L 296



 Score = 33.1 bits (74), Expect = 9e-06
 Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 96  LFQRYGISA-GVQVASGSVITEINRVVQDKHSDLLVCGARGQSVARRLLLGSTVQKLLNR 154
           L   YGI      V  G     I  + +   ++L++ G  G++     L+G+T + +++ 
Sbjct: 231 LADAYGIDKQNCHVKEGLPEDVIPELAEQLDAELVILGTVGRTGFSAALIGNTAEHVIDS 290

Query: 155 MPCPLLVVKPAPRDAYRTVL 174
           + C LL +KP   D Y++ L
Sbjct: 291 INCDLLAIKP---DGYKSPL 307



 Score = 23.9 bits (50), Expect = 0.005
 Identities = 30/143 (20%), Positives = 63/143 (44%), Gaps = 7/143 (4%)

Query: 170 YRTVLVPVDFSSVSLRTIELAKAIAPQAEI---ILLHAYEAPFEASVRFAHLDHDTLTHY 226
           Y+ +LV VD ++ +   +  A  +A ++     + L  ++  +E +   +  + + +   
Sbjct: 4   YQKILVVVDPTTENQVALARAVTLASKSNAHVTVFLSIFDFSYEMTSILSSQEREAMR-- 61

Query: 227 RNVI-RKDAQVQ-LAALSEAAGLADARQILVHGDPGWRIAEQEQELECDLIVVGKQGASA 284
           + VI ++ A +Q L A     GL    Q++ H  P   I       + DLIV G      
Sbjct: 62  QGVIDQRVAWIQDLLAPYNHLGLNIDTQVIWHNRPFESIINHAIAGQYDLIVKGTHAHDK 121

Query: 285 LEELLVGSVTKHVLNESQCDVLV 307
           L+ ++      H++ ++   VL+
Sbjct: 122 LKAVIFTPTDWHLMRKAPVPVLM 144