Pairwise Alignments

Query, 722 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 741 a.a., VgrG protein from Pseudomonas fluorescens FW300-N2E2

 Score =  367 bits (942), Expect = e-105
 Identities = 220/617 (35%), Positives = 323/617 (52%), Gaps = 32/617 (5%)

Query: 3   SQSDLRYSFEALVGKAAFEVVSFELREGISAPFELELKLISFENDIDFGHLLDKPVLFTI 62
           +Q++     ++ +G     + S E  E +   F  EL L S +  I F  LL KP+  T+
Sbjct: 4   TQNNRLVQVDSPLGGDVLLLQSMEGSEELGRLFHYELDLTSEDRAITFDQLLGKPMGLTL 63

Query: 63  LDGERPVRYVHGLVSSFSQGESGFYRTYYHALVEPQLARARLRSNWRIFQHKTVPQILEL 122
              +   RY HG+V S  Q         Y   + P        S+ RIFQ+KTVP I++ 
Sbjct: 64  ELYDGGKRYFHGIVCSCRQLTGHGQFAGYRVSLRPWFWLLTRTSDCRIFQNKTVPDIIKQ 123

Query: 123 MLKRQGIDQYELRASMDHQVREFCVQAGETDLAFIARLAAEEGFVYRFAHSEKLHKLIIT 182
           + +  G   +E   S  ++  E+CVQ  ET   F++RL  +EG  Y F H +  H L++ 
Sbjct: 124 VFRDLGFSDFEDSLSGSYREWEYCVQYRETSFDFVSRLMEQEGIYYYFRHDKSRHVLVLA 183

Query: 183 DRLQSLGLISHGA--IKADHEDEGFGDDDEPVGPDSVLYQANSGGDQAIPCLRRLRYSEQ 240
           D        ++GA    AD+E   F   D  +      Y                + + +
Sbjct: 184 D--------AYGAHSTAADYESVPFYPPDRQMRERDHFYD--------------WQLARE 221

Query: 241 VRTARQVQRDHTFTHPAYRQEHRAAGPFLEHQSKDYEYFDYPGRYKRDAVGKPFTENRIT 300
           V+       D+ F  P    E R++ P   H + DY  +DYPG Y +   G  +   RI 
Sbjct: 222 VQPGSLALNDYDFLRPRASLEVRSSVP-RTHTNADYPLYDYPGEYVQSNDGDHYARTRIE 280

Query: 301 ALRHDVRIAEVQGDDVRLQPGLSFTLTDHPREDLNVHWRVSTVHHEGSQPTSLQEEAAGA 360
           A+       +++G    +  G  FTLT + R D N  + V    ++  Q      E+  +
Sbjct: 281 AIHSQFERVQLRGRARGIGCGHVFTLTGYDRADQNREYLVVAARYQIRQDAY---ESGQS 337

Query: 361 DQGTRYEQKAVLVPGRTEWRPAPL-PKPRVDGPHMATVVGPPGEEIYCDEWGRVKVSFPW 419
           D   ++  +   +     +RP PL P P V GP  A VVGP GEEI+ D++GRVKV F W
Sbjct: 338 DVAEQFVSELDCMDANQAFRPLPLTPMPIVRGPQTAVVVGPSGEEIWTDQYGRVKVHFHW 397

Query: 420 DRESQNNEFSSCWLRVSQGWAGGSWGSMAIPRIGQDVIIHYVNGDPDQPMITGRTYCGNQ 479
           DR  Q+NE SSCW+RVSQ WAG +WGS+ +PRIGQ+VI+ ++ GDPD+P+ITGR Y   Q
Sbjct: 398 DRHDQSNENSSCWIRVSQAWAGKNWGSVQLPRIGQEVIVSFLEGDPDRPIITGRVYNAEQ 457

Query: 480 LPPYDLPRHKTRMTIKSQTHKGD---GFNELRFEDELGQEEVFIHAQRDQNNVVKHDETT 536
             PY LP + T+  +KS++ KG     FNE+R ED+ G E++FIHA+++Q+  V++DET 
Sbjct: 458 TVPYGLPANATQSGVKSRSSKGGSPANFNEIRMEDKKGAEQLFIHAEKNQDIEVENDETH 517

Query: 537 QVGNDRKEQVDNDESILIGHDRTETVGNDERITIGQDAALDIGRNHTIRIAKDRVENIGN 596
            VG+DR++ +DNDE++ + HDRTETV N+E ITIG D    +G N TI I  +R E +G+
Sbjct: 518 WVGHDRRKTIDNDETVHVKHDRTETVDNNETITIGVDRTEKVGNNETISIGVNRTEKVGS 577

Query: 597 HRHDQIAANHHTRIGGN 613
                I AN    +G N
Sbjct: 578 DEKITIGANRTENVGSN 594



 Score = 60.8 bits (146), Expect = 2e-13
 Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 9/157 (5%)

Query: 508 RFEDELGQEEVFIHAQRDQNNVVKHDETTQVGNDRKEQVDNDESILIGHDRTETVGNDER 567
           R E     E++ I A R +N  V  +ET  +G DR E+V  +E I I  +RTE VG +E 
Sbjct: 571 RTEKVGSDEKITIGANRTEN--VGSNETITIGADRTEKVGANEKISIASNRTEDVGGNET 628

Query: 568 ITIGQDAALDIGRNHTIRIAKDRVENIGNHRHDQIAANHHTRIGGNFEQRVEGHAELEAR 627
           I I  +    +  N  I I+ ++   IG +    +A N  T I  N    V  H  L A 
Sbjct: 629 IGISGNRNETVQGNEGIEISGNQSTQIGQNESRDVAQNRTTNIKQNDSLDVGKHFSLTAG 688

Query: 628 GDIRRRTRRYELRASEAVVIQGPGGSIRIDETGITLD 664
             I        L   +A +     G+I I    IT+D
Sbjct: 689 DSI-------SLTTGDASITMKKDGTIMISGKNITID 718