Pairwise Alignments

Query, 722 a.a., type 6 secretion system protein from Pseudomonas putida KT2440

Subject, 1163 a.a., type VI secretion system tip protein VgrG from Vibrio cholerae E7946 ATCC 55056

 Score =  445 bits (1145), Expect = e-129
 Identities = 229/565 (40%), Positives = 326/565 (57%), Gaps = 24/565 (4%)

Query: 35  FELELKLISFENDIDFGHLLDKPVLFTILDGERPVRYVHGLVSSFSQGESGFYRTYYHAL 94
           F  E++L S  +++    ++DK     +    + V+ VHG+V +FSQG+ G + T+Y   
Sbjct: 42  FRYEVQLASRVSNLTAEQMVDKRAELKLYRNSQLVQRVHGIVRAFSQGDIGHHHTFYQLT 101

Query: 95  VEPQLARARLRSNWRIFQHKTVPQILELMLKRQGIDQYELRASMDHQVREFCVQAGETDL 154
           + P L R  LR N RIFQ +TVP+IL ++L+  GI+ Y      D   REFCVQ  E+D+
Sbjct: 102 LVPALERLSLRHNSRIFQKQTVPEILSILLQEMGINDYAFALKRDGVQREFCVQYRESDI 161

Query: 155 AFIARLAAEEGFVYRFAHSEKLHKLIITDRLQSLGLISHGAIKADHEDEGFGDDDEPVGP 214
            F+ RLAAEEG VY F H    H L  +D   SL  +                      P
Sbjct: 162 DFLHRLAAEEGLVYSFVHEAGKHTLYFSDASDSLSKL----------------------P 199

Query: 215 DSVLYQANSGGDQAIPCLRRLRYSEQVRTARQVQRDHTFTHPAYRQEHRAAGPFLEHQSK 274
           + + Y A  GG    P +  L Y  Q   +    +D++F  PAY       G  L++Q  
Sbjct: 200 EPIPYNALVGGAIDTPYIHGLTYRTQAEVSEVQLKDYSFKKPAYSFLQTVQGTELDYQQT 259

Query: 275 DYEYFDYPGRYKRDAVGKPFTENRITALRHDVRIAEVQGDDVRLQPGLSFTLTDHPREDL 334
            Y++FD PGRYK D  G  F++ R+  LR     A  Q ++  L+ G  F L +H    +
Sbjct: 260 RYQHFDAPGRYKDDVNGAAFSQIRLDYLRRHAHTATGQSNEPLLRAGYKFDLQEHLDPAM 319

Query: 335 NVHWRVSTVHHEGSQPTSLQEEAAGADQGTRYEQKAVLVPGRTEWRPAPLPKPRVDGPHM 394
           N  W V +++H+G QP +LQE+  G    T Y  +  L+PG   WR  P PKP+VDGP +
Sbjct: 320 NRDWVVVSINHQGEQPQALQED--GGSGATTYSNQFSLIPGHLHWRAEPQPKPQVDGPMI 377

Query: 395 ATVVGPPGEEIYCDEWGRVKVSFPWDRESQNNEFSSCWLRVSQGWAGGSWGSMAIPRIGQ 454
           ATVVGP GEEI+CDE GRVK+ FPWDR S  NE SSCW+RVSQGWAG  +G +AIPRIG 
Sbjct: 378 ATVVGPEGEEIFCDEHGRVKIHFPWDRYSNGNEQSSCWVRVSQGWAGSQYGFIAIPRIGH 437

Query: 455 DVIIHYVNGDPDQPMITGRTYCGNQLPPYDLPRHKTRMTIKSQTHKGDGFNELRFEDELG 514
           +VI+ ++NGDPDQP+ITGRTY     PPY LP HKT+  ++++TH+G+GFNEL FED+ G
Sbjct: 438 EVIVEFLNGDPDQPIITGRTYHATNTPPYTLPEHKTKTVLRTETHQGEGFNELSFEDQAG 497

Query: 515 QEEVFIHAQRDQNNVVKHDETTQVGNDRKEQVDNDESILIGHDRTETVGNDERITIGQDA 574
           +E++++HAQ+D + ++++D TT + +D    V+ND+   I H++  TV  + R  +  + 
Sbjct: 498 KEQIYLHAQKDFDGLIENDHTTVIRHDHHLTVENDQFTQIKHNQHLTVEWESREAVTGEQ 557

Query: 575 ALDIGRNHTIRIAKDRVENIGNHRH 599
            L I  +  ++  K  V   G   H
Sbjct: 558 VLSIEGSLHVKTGKVWVNEAGTEIH 582