Pairwise Alignments

Query, 597 a.a., putative ABC transporter, permease/ATP-binding protein from Pseudomonas putida KT2440

Subject, 590 a.a., Lipid A export ATP-binding/permease protein MsbA from Pseudomonas fluorescens FW300-N2E2

 Score =  245 bits (625), Expect = 4e-69
 Identities = 184/561 (32%), Positives = 288/561 (51%), Gaps = 27/561 (4%)

Query: 42  AGSMLALVPLAGIAHIAHLALSETATSGAIGRA---IAASIAS---LFTGMTLITAAEM- 94
           AG++LAL+  AGI       +      G + R+   +  SI     L  G+ + T A   
Sbjct: 25  AGALLALIVTAGITLSMGQGIRLLVDQGFMTRSPHLLNQSIGLFMVLVVGLAIGTFARFY 84

Query: 95  LAHQADNHITHHLRVAIGQRLMQVPLGWFSERASSEVKRAMQDDIGTLHSLTAHFFTTLG 154
           L       +   +R  +   L+ +  G++    SSE++  +  D   L S+     +   
Sbjct: 85  LVSWIGERVVADIRRQVFNHLVYLHPGFYENNRSSEIQSRLTADTTLLQSVIGSSLSLFL 144

Query: 155 RTVGAVLISVAYLFAMDWRLAVVVLLPFP---AFFLFLHRAIKASAAHMGDVVAGMARID 211
           R    V+  +  LF  + +L  +V++  P   A  L   R +++ +    D +A    + 
Sbjct: 145 RNALMVVGGIVLLFITNPKLTSIVVIALPLVLAPILVFGRRVRSLSRQSQDRIAD---VG 201

Query: 212 NAVVEFVNGMPLVKAFGGRGNAQDRYRAAVDAFANTFTGFTRPLVAAMARANALIAPVTV 271
           + V E +  +  V+A+  +   + R+   V+   +T     R  +A  A    L+  + +
Sbjct: 202 SYVSETLGQIKTVQAYNHQVQDEQRFSVTVEQAFDT----ARKRIAQRAWLITLVIVLVL 257

Query: 272 --VGVVLLAGMAFVALGWIEPLQILPFALVAPGLCAPLQLLHYITHDLNNAVGAAQRVQV 329
             VGV+L  G   V  G I   ++  F   +  + +    L  +  +L  A GAA+R+  
Sbjct: 258 GAVGVMLWVGGMDVIAGRISGGELAAFVFYSLIVGSAFGTLSEVIGELQRAAGAAERIAE 317

Query: 330 LLDTPVL---PAPAVGSLPNG--SELRVEQLSHAYA--PGNNVLDDVSFTLAPGTTTAIV 382
           LL +  +   PA  + +LP     +LR+E +  +Y   P +  +D +  T+  G T A+V
Sbjct: 318 LLRSQNIIQPPASGLVTLPERVRGDLRLEGVRFSYPSRPDSYAVDGLDLTIKAGETLALV 377

Query: 383 GPSGAGKSTLARLLLRFFDPDAGRITLGGVDLRQIESRELYRRIGFVLQEVRLIHASVAD 442
           GPSGAGKST+  LLLRF+DP  G+I +  V L +++  +L R    V Q   L   +V +
Sbjct: 378 GPSGAGKSTVYDLLLRFYDPVQGQILIDDVPLTRLDPLDLRRHFALVSQNPALFFGTVEE 437

Query: 443 NIALGKPAATREQVEAAARLANIHTRILQLPRGYDSVVGEDAQ-LSGGEQQRLSIARAVL 501
           NI  G P AT EQV  AA++A+ H  I ++P GY + +G+  Q LSGG++QRL+IARA+L
Sbjct: 438 NIRYGNPGATSEQVREAAQIAHAHDFIEKMPGGYQTHLGDGGQGLSGGQRQRLAIARALL 497

Query: 502 LDPPVLVLDEATAAADAESEAAIQDALSRFARGRTLLVIAHRLDTVMHADQILVLDQGAL 561
           +D P+L+LDEAT+A DA+SE  IQ AL    + RT LVIAHRL TV +AD+I V+DQG +
Sbjct: 498 VDAPILLLDEATSALDAQSEHLIQQALPNLMKNRTTLVIAHRLATVKNADRIAVMDQGKV 557

Query: 562 CEQGRHSELLNRQGLYARLWA 582
              G H EL+    LYARL A
Sbjct: 558 VAVGTHQELVASNALYARLAA 578