Pairwise Alignments

Query, 597 a.a., putative ABC transporter, permease/ATP-binding protein from Pseudomonas putida KT2440

Subject, 582 a.a., lipid A export ATP-binding/permease MsbA from Vibrio cholerae E7946 ATCC 55056

 Score =  235 bits (599), Expect = 4e-66
 Identities = 158/487 (32%), Positives = 261/487 (53%), Gaps = 14/487 (2%)

Query: 102 HITHHLRVAIGQRLMQVPLGWFSERASSEVKRAMQDDIGTLHSLTAHFFTTLGRTVGAVL 161
           ++   +R  +    M +P+ +F + ++  +   +  D   +   T+    ++ R   +++
Sbjct: 95  NVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASII 154

Query: 162 ISVAYLFAMDWRLAVVVLLPFPAFFLFLHRAIKASAAHMGDVVAGMARIDNAVVEFVNGM 221
             +  +F   W+L++V+++  P     +    K       ++   M  + ++  + + G 
Sbjct: 155 GLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGH 214

Query: 222 PLVKAFGGRGNAQDRYRAAVDAFANTFTGFTRPLVAAMARANA---LIAPVTVVGVVLLA 278
            +V ++GG    Q+  R   D  +N+    T  LV+A + A+    +IA + +  V+ LA
Sbjct: 215 KVVLSYGG----QEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAVLFLA 270

Query: 279 GMAFVALGWIEPLQILPFALVAPGLCAPLQLLHYITHDLNNAVGAAQRVQVLLD--TPVL 336
            +  +          + F+ +  GL  PL+ L  +T +    + A Q +  L+D  T   
Sbjct: 271 SVDSIRAELTPGTFTVVFSAMF-GLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329

Query: 337 PAPAVGSLPNGSELRVEQLSHAYAPGNN-VLDDVSFTLAPGTTTAIVGPSGAGKSTLARL 395
                    NG E+ V+ ++  Y       L  VSF++  G T A+VG SG+GKST+A L
Sbjct: 330 NGKYEAERVNG-EVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANL 388

Query: 396 LLRFFDPDAGRITLGGVDLRQIESRELYRRIGFVLQEVRLIHASVADNIALGKPAA-TRE 454
             RF+D D+G I L G D+R  +   L R    V Q V L + ++A+NIA       TRE
Sbjct: 389 FTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTRE 448

Query: 455 QVEAAARLANIHTRILQLPRGYDSVVGEDA-QLSGGEQQRLSIARAVLLDPPVLVLDEAT 513
           Q+E AAR A+    I  +P+G D+V+GE+   LSGG++QR++IARA+L D PVL+LDEAT
Sbjct: 449 QIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEAT 508

Query: 514 AAADAESEAAIQDALSRFARGRTLLVIAHRLDTVMHADQILVLDQGALCEQGRHSELLNR 573
           +A D ESE AIQ AL    + +T+LVIAHRL T+  AD+ILV+D+G + E+GRH++LL +
Sbjct: 509 SALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ 568

Query: 574 QGLYARL 580
            G YA+L
Sbjct: 569 DGAYAQL 575