Pairwise Alignments

Query, 585 a.a., putative ABC transporter, permease/ATP-binding protein from Pseudomonas putida KT2440

Subject, 1000 a.a., cyclic nucleotide-binding domain (cNMP-BD) protein from Synechococcus elongatus PCC 7942

 Score =  197 bits (500), Expect = 2e-54
 Identities = 141/486 (29%), Positives = 240/486 (49%), Gaps = 15/486 (3%)

Query: 95   QVAQLPLGWFTPDNTARLGHVITQGTMAVAQLPAHVLTPLISSSVTPLVLLVALFILHPP 154
            ++ +LPL +F       L   + +     + L    LT ++ +  + + +LV L +    
Sbjct: 523  RLLKLPLRYFERRPVGELSSRVQELEKIRSFLTGTALTTVMDAMFSVIYILVML-VYSWF 581

Query: 155  LGLVALLALPALAAVLLFSARLGRRADHAFHQHFAAASQRMVEFAQAQSVLRAFNGEGGG 214
            L LVAL  +P   A+  F++ + RR      +  A    ++VE       ++A N E   
Sbjct: 582  LTLVALSTVPIFVAITFFASPVVRRQLREKAERNAETQSQLVEVLSGIQTVKAQNIELKA 641

Query: 215  TRLLAQSLERQRSSGMGLIIRASLSALLNSWAVQATFAALLVAAGLWFGDQAGGQAQDAV 274
                 +   R  ++G   I  ++ ++ L ++  Q   + LLV   LW G       Q ++
Sbjct: 642  RWQWQERYARYIAAGFRNINTSTAASSLTNFFNQ--LSGLLV---LWVGVYLVFDNQLSL 696

Query: 275  AVIVALVLVCRFIDPLQDVASHVEILRGAHGQLQEIERILAAKPLPEPAS-------PHR 327
              ++A  ++  ++   Q +    ++ +        +ER+      P+ +        P  
Sbjct: 697  GQLIAFRIISGYVT--QPLLRLAQLWQNFQETALSLERLADIVDTPQESDDDDQGKIPMP 754

Query: 328  PVGGAINLQGVSLRYNPTGPDVLQNVNLHIPAGSMTAVIGASGSGKTSLMRLIARFFDTT 387
             + G +  + +S R+   GP  L NV L IPAG    ++G SGSGK++LM+L+ R +   
Sbjct: 755  MINGKVEFRNLSFRFGEQGPLQLSNVTLEIPAGEYVGIVGQSGSGKSTLMKLLPRLYSPL 814

Query: 388  EGSVRIGGVDVRQMARASLTDTVSQVLQDTWLFQGSIADNIRIGKPDASDAEVLQAAHMA 447
            EG + I G D+ ++   SL   +  V QD+ LFQG++ +NI + KP+A+  E++ AA  A
Sbjct: 815  EGEILIDGYDISKVELYSLRRQIGIVPQDSLLFQGTVEENISLTKPNATTDEIITAAKAA 874

Query: 448  GLGHTLERLRGGLDTSVGEGGAQLSGGERQRVTIARALIRQAPVLLVDEATAALDAENQA 507
            G    +  L  G +T VGE G  LSGG+RQR+ IAR +++   +L++DEAT+ALD + + 
Sbjct: 875  GAHDFIMTLPLGYNTRVGERGGALSGGQRQRIAIARTVLQNPQLLILDEATSALDYDTER 934

Query: 508  VIAQTLHSLHGRCTLVVIAHQLSTVAMADHIVVLDAGQVVEQGTPATLRANGGHYARMLE 567
             ++  L       T+  I H+LSTV  AD I+V+D G +VEQG+   L    G Y  +  
Sbjct: 935  QVSINLQQHFRGKTVFFITHRLSTVRHADRIIVMDKGAMVEQGSHDELMELRGRYFCLYR 994

Query: 568  QRHAAN 573
            Q+ A N
Sbjct: 995  QQDALN 1000