Pairwise Alignments

Query, 585 a.a., putative ABC transporter, permease/ATP-binding protein from Pseudomonas putida KT2440

Subject, 576 a.a., ABC transporter ATP-binding/transmembrane protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  248 bits (632), Expect = 6e-70
 Identities = 175/535 (32%), Positives = 281/535 (52%), Gaps = 30/535 (5%)

Query: 55  WLV--VLAAGLTLCWAWRRQVEKAGISLAVAVLQGGRQHIGAQVAQLPLGWFTPDNTARL 112
           W++  +L   + +     R   +A    A  +   GR ++   + +L LG+ +  +   L
Sbjct: 60  WMIFAILVVYMVVMAFAERAAYRANFRGAYEMSAEGRINLAEHLRKLSLGFLSRRDPGDL 119

Query: 113 GHV-ITQGTMAVAQLPAHVLTPLISSSVTPLVLLVALFILHPPLGLVALLALPALAAVLL 171
             + IT  TMA   + +H L  L+ + V P+   + L  +   + +   +ALP   AVLL
Sbjct: 120 SSMLITDFTMAETGI-SHHLPQLMGALVMPVFAFLGLLWIDWRMAVAMFVALPLAVAVLL 178

Query: 172 FSARLGRRADHAFHQHFAAASQRMVEFAQAQSVLRAFNGEGGGTRLLAQSLERQRSSGMG 231
            S    R+      +    A  R+ E+ Q   V++A+N  GG    L  +    R +   
Sbjct: 179 LSNIAQRKLSVRQIEAKINAGNRLEEYLQGIRVMKAYNLLGGKFERLKMAFSDLRRA--- 235

Query: 232 LIIRASLSALLNSWAVQATFAALLVAAGLWFGDQAG-----GQAQDAVAVIVALVLVCRF 286
             IR    ALL  + +   F+  L+ AGL F    G     G     +  ++ LV+  R 
Sbjct: 236 -CIRQE--ALLGPFIL---FSVTLIRAGLTFMILCGTYLLIGGELSLLTFVMFLVVGSRV 289

Query: 287 IDPLQDVASHVEILRG---AHGQLQEIERILAAKPLPEPASPHR-PVGGAINLQGVSLRY 342
            DPL    ++    R    A G      RIL     PE       P  G I    VS  Y
Sbjct: 290 FDPLTSALTNFAEFRYFSIAGG------RILTLMNEPEMKGDRDVPESGDITFDHVSFGY 343

Query: 343 NPTGPDVLQNVNLHIPAGSMTAVIGASGSGKTSLMRLIARFFDTTEGSVRIGGVDVRQMA 402
                ++L ++++ +  G++TA++G SGSGK+++++L ARF+D  +GSVR  G+D++++ 
Sbjct: 344 QEK--EILHDISVTLRKGTLTALVGPSGSGKSTMLKLCARFYDPRKGSVRFNGMDMKELE 401

Query: 403 RASLTDTVSQVLQDTWLFQGSIADNIRIGKPDASDAEVLQAAHMAGLGHTLERLRGGLDT 462
             SL    S V QD +LFQ ++ +NIR G+ DA+D E++ AA  A     + RL  G DT
Sbjct: 402 PESLMKHCSMVFQDVYLFQDTLKNNIRFGRTDATDEEIVAAAKKACCHEFIMRLPKGYDT 461

Query: 463 SVGEGGAQLSGGERQRVTIARALIRQAPVLLVDEATAALDAENQAVIAQTLHSLHGRCTL 522
            VGEGG  LSGGE+QR++IARA++++APV+L+DEATA+LD EN+  + Q +++L    T+
Sbjct: 462 MVGEGGCTLSGGEKQRISIARAMLKEAPVVLLDEATASLDPENEVEVQQAINTLIAGRTV 521

Query: 523 VVIAHQLSTVAMADHIVVLDAGQVVEQGTPATLRANGGHYARMLEQRHAANGWRI 577
           +VIAH+L T+  AD I+VL+ G++ EQGT   L +  G YA++   +   +GW++
Sbjct: 522 IVIAHRLKTIRNADRIIVLEEGRIAEQGTHDELLSRPGLYAKLWNIQEQTSGWKL 576