Pairwise Alignments

Query, 823 a.a., putative helicase, UvrD/REP family from Pseudomonas putida KT2440

Subject, 687 a.a., DNA helicase IV from Vibrio cholerae E7946 ATCC 55056

 Score = 55.1 bits (131), Expect = 1e-11
 Identities = 69/275 (25%), Positives = 113/275 (41%), Gaps = 45/275 (16%)

Query: 533 PLAHLMIDEFQDVSPQIVSWLRACLAEIRRRGPAMHTGRHAQHSSLLCVGDDWQSIYGWR 592
           P   +M+DE+QD+SPQ +  L+A   +            +    +L  VGDDWQSIY + 
Sbjct: 435 PWKFIMVDEYQDISPQRLRLLQALCEQ------------NQGQCNLFAVGDDWQSIYQFA 482

Query: 593 GSSPKYFMEFTKAFPSPANTRVMLVD-NYRCQQQVIDAAEHLVKGTP-----AIAGKKAR 646
           GS       F   F   A++ V  +D  YR   Q+   A   ++  P      +   K +
Sbjct: 483 GSDVDLTTGFASRF---AHSTVHHLDTTYRFNDQIGAVANRFIQQNPHQLPKTLNSFKTQ 539

Query: 647 ASGPAAELPGSPV-KVFDRDEAALGETLVEHYQRGETVMMLYRKGSDRALMNEHLQSVLH 705
                   P   V K+ D    +  +         +TV++L R        N + +  L 
Sbjct: 540 KQKAVMLAPNHSVEKILDEINRSTNKL--------KTVLLLGR--------NHYHKPELL 583

Query: 706 AEAALPAEQRRLRQLTYHSAKGLQADAVFMLGDCQYLTSSPYKNQVYRQAGLGKAGDAQP 765
            +        +L  +T H++KG +AD V +L   +    +  K  ++    L ++ D  P
Sbjct: 584 KDWQNRYLSLKLDFMTCHASKGKEADYVIILAVDEGQFPARVK-ALHLDDALNQSEDDFP 642

Query: 766 FDTAQKEEVQRLAYVAVTRAVQHCYWHVEAANGDA 800
           +      E +RL YVA+TRA +   W     NG +
Sbjct: 643 Y-----AEERRLFYVALTRAKEK-VWVTYNGNGSS 671



 Score = 35.0 bits (79), Expect = 1e-05
 Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 34/145 (23%)

Query: 102 WRLPLTAELKKRFKADVAQRLPAEAQPSAAQWKLIFSDTPST-----------------C 144
           W L  +A L +R KA +        +   A W ++FS   S+                  
Sbjct: 165 WLLDTSATLYERNKAWL--------EIERANWTVLFSQCESSPLNVSQQYAVLLNDDHNL 216

Query: 145 VVAGAGAGKSTSLVLRI-LLLRHYLGYELDAMTVVTFTRESRKDFIKRLLQVFALWQINL 203
           V+AGAG+GK++ L  R+  LL+ +L  + + + +V F R++ ++  +RL     L    L
Sbjct: 217 VLAGAGSGKTSVLTARVSYLLQSHLA-KPEQILLVAFARDAAQEMAERLKNKIGLEAERL 275

Query: 204 QPVQARELVRTFHSRILPLVRSLPG 228
                   + TFH   L ++  + G
Sbjct: 276 H-------INTFHQLGLRIINRVEG 293