Pairwise Alignments

Query, 823 a.a., putative helicase, UvrD/REP family from Pseudomonas putida KT2440

Subject, 723 a.a., DNA helicase II from Vibrio cholerae E7946 ATCC 55056

 Score = 73.6 bits (179), Expect = 4e-17
 Identities = 55/173 (31%), Positives = 88/173 (50%), Gaps = 29/173 (16%)

Query: 536 HLMIDEFQDVSPQIVSWLRACLAEIRRRGPAMHTGRHAQHSSLLCVGDDWQSIYGWRGSS 595
           H+++DEFQD +    +WLR            M  G     S+++ VGDD QSIYGWRG+ 
Sbjct: 216 HILVDEFQDTNAIQYAWLR------------MMAGAQ---SNVMIVGDDDQSIYGWRGAR 260

Query: 596 PKYFMEFTKAFPSPANTRVMLVDNYRCQQQVIDAAEHLVKGTPAIAGKKARASGPAAELP 655
            +   +FT+ FPS  NT + L  NYR  + +++A+  L+       GK+    G    L 
Sbjct: 261 VENIEKFTREFPS-VNT-IRLEQNYRSTKTILEASNTLIANNSERMGKQLWTDG----LV 314

Query: 656 GSPVKVF----DRDEAALGETLVEHYQ-RGETV---MMLYRKGSDRALMNEHL 700
           G P+ V+    + DEA    + ++ +Q +G T+    +LYR  +   ++ E L
Sbjct: 315 GEPISVYSAYNELDEARFVVSKIKGWQEQGGTLTDCAILYRNNAQSRVLEEAL 367



 Score = 37.4 bits (85), Expect = 3e-06
 Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 21/137 (15%)

Query: 659 VKVFDRDEAALGETLVEHYQRGETVMMLYRKGSDRALMNEHLQSVLHA-----EAALPAE 713
           ++++ +++    +  +E+ +   T    + K  +   M      + HA     E      
Sbjct: 491 LEMYQQEKGEKSKARIENLEELVTATRQFEKPEEAQEMTMLTAFLTHAALEAGEGQADEH 550

Query: 714 QRRLRQLTYHSAKGLQADAVFMLGDCQYLTSSPYKNQVYRQAGLGKAGDAQPFDTAQKEE 773
              ++ +T HSAKGL+   VFM+G    +    + +Q+  +            +  + EE
Sbjct: 551 DDAVQLMTLHSAKGLEFPLVFMVG----VEEGMFPSQMSAE------------EAGRLEE 594

Query: 774 VQRLAYVAVTRAVQHCY 790
            +RL YV +TRA+Q  Y
Sbjct: 595 ERRLCYVGMTRAMQKLY 611



 Score = 26.9 bits (58), Expect = 0.004
 Identities = 16/48 (33%), Positives = 26/48 (54%)

Query: 145 VVAGAGAGKSTSLVLRILLLRHYLGYELDAMTVVTFTRESRKDFIKRL 192
           ++AGAG+GK+  LV RI  L         ++  VTFT ++  +   R+
Sbjct: 28  ILAGAGSGKTRVLVHRIAWLMSVEEASPFSVMAVTFTNKAAAEMRGRI 75