Pairwise Alignments

Query, 823 a.a., putative helicase, UvrD/REP family from Pseudomonas putida KT2440

Subject, 671 a.a., DNA helicase Rep from Vibrio cholerae E7946 ATCC 55056

 Score = 54.7 bits (130), Expect = 2e-11
 Identities = 49/184 (26%), Positives = 76/184 (41%), Gaps = 46/184 (25%)

Query: 471 AMSFPSGDSDALFFEALALYWKALEAHLLDQSPPVMSYNRMFALFGENNPENLHLLPDPL 530
           A +   G+   LF     LY K ++           SYN +       + ++L LLP  L
Sbjct: 152 AKAMAKGEQQLLFAHCFELYQKQMQ-----------SYNAL-------DFDDLILLPVLL 193

Query: 531 LRP-----------LAHLMIDEFQDVSPQIVSWLRACLAEIRRRGPAMHTGRHAQHSSLL 579
           LR            + +L++DE+QD +      ++  + E  R               L 
Sbjct: 194 LRSNEEVRQRWQNRIRYLLVDEYQDTNTSQYELVKLLVGERGR---------------LT 238

Query: 580 CVGDDWQSIYGWRGSSPKYFMEFTKAFPSPANTRVMLVDNYRCQQQVIDAAEHLVKGTPA 639
            VGDD QSIY WRG+ P+  +   + FPS     + L  NYR   +++ AA  L+   P 
Sbjct: 239 VVGDDDQSIYSWRGAKPQNLVLLGEDFPS--LKLIKLEQNYRSTSRILRAANILIANNPH 296

Query: 640 IAGK 643
           +  K
Sbjct: 297 VYQK 300



 Score = 38.9 bits (89), Expect = 1e-06
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 16/96 (16%)

Query: 145 VVAGAGAGKSTSLVLRILLLRHYLGYELDAMTVVTFTRESRKDFIKRLLQVFALWQINLQ 204
           V+AGAG+GK+  +  +I  L    GY+   +  VTFT ++ ++  +R+ Q        L 
Sbjct: 20  VLAGAGSGKTRVITNKIAYLVQQCGYKARNIAAVTFTNKAAREMKERVAQ-------TLG 72

Query: 205 PVQAREL-VRTFHSRILPLVRSLPGFGQVRAFETLG 239
             ++R L V TFH+  L ++R        R F+ LG
Sbjct: 73  KGESRGLMVSTFHTLGLNIIR--------REFKALG 100



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 17/66 (25%)

Query: 720 LTYHSAKGLQADAVFMLGDCQYLTSSPYKNQVYRQAGLGKAGDAQPFDTAQKEEVQRLAY 779
           +T H++KGL+   V+++G  + +   P++  +               D    EE +RL Y
Sbjct: 557 MTLHASKGLEFPYVYLIGAEEGIL--PHQTSI---------------DEENVEEERRLMY 599

Query: 780 VAVTRA 785
           V +TRA
Sbjct: 600 VGITRA 605