Pairwise Alignments

Query, 823 a.a., putative helicase, UvrD/REP family from Pseudomonas putida KT2440

Subject, 857 a.a., DNA helicase II protein from Sinorhizobium meliloti 1021

 Score = 54.7 bits (130), Expect = 2e-11
 Identities = 41/140 (29%), Positives = 58/140 (41%), Gaps = 34/140 (24%)

Query: 536 HLMIDEFQDVSPQIVSWLR--ACLAEIRRRGPAM-----------HTGRHAQHSSLL--- 579
           ++++DE+QD +     WLR  A   +  R  P+              G+ A+  S L   
Sbjct: 256 YILVDEYQDTNTAQYMWLRLLAQQTQASRNRPSSGLPATFSPSDGEKGQAARSQSPLSPS 315

Query: 580 ----------------CVGDDWQSIYGWRGSSPKYFMEFTKAFPSPANTRVMLVDNYRCQ 623
                           CVGDD QSIYGWRG+     + F K FP      + L  NYR  
Sbjct: 316 ERGEGRGEGQPTVNICCVGDDDQSIYGWRGAEVDNILRFEKDFPGA--KVIKLERNYRST 373

Query: 624 QQVIDAAEHLVKGTPAIAGK 643
           + ++ AA HL+       GK
Sbjct: 374 EHILGAAAHLIAHNEGRLGK 393



 Score = 40.4 bits (93), Expect = 4e-07
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 19/94 (20%)

Query: 705 HAEAALPAEQRR----LRQLTYHSAKGLQADAVFMLGDCQYLTSSPYKNQVYRQAGLGKA 760
           H    + AEQ      +  +T HSAKGL+ D VF+ G  + L    + +Q     G G+A
Sbjct: 617 HVALVMDAEQNENMDAVSIMTLHSAKGLEFDTVFLPGWEEGL----FPHQRALDEG-GRA 671

Query: 761 GDAQPFDTAQKEEVQRLAYVAVTRAVQHCY-WHV 793
           G          EE +RLAYV +TRA + C+ W V
Sbjct: 672 G---------LEEERRLAYVGITRAKRRCHIWFV 696



 Score = 26.9 bits (58), Expect = 0.005
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 145 VVAGAGAGKSTSLVLRILLLRHYLGYELDAMTVVTFTRESRKDFIKRLLQVFALWQINLQ 204
           V+AGAG GK+  L  RI  +          +  VTFT ++ ++  +R+  +         
Sbjct: 64  VLAGAGTGKTRVLTTRIAHILSTGRAYPSQILAVTFTNKAAREMKERIGVLVG------H 117

Query: 205 PVQARELVRTFHSRILPLVR 224
            V+    + TFHS  + L+R
Sbjct: 118 AVEGMPWLGTFHSIGVKLLR 137