Pairwise Alignments

Query, 823 a.a., putative helicase, UvrD/REP family from Pseudomonas putida KT2440

Subject, 870 a.a., helicase IV (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 62.8 bits (151), Expect = 8e-14
 Identities = 62/258 (24%), Positives = 107/258 (41%), Gaps = 34/258 (13%)

Query: 536 HLMIDEFQDVSPQIVSWLRACLAEIRRRGPAMHTGRHAQHSSLLCVGDDWQSIYGWRGSS 595
           ++++DEFQD+S    ++L+     +R   P          + L CVGDDWQSIY + GS 
Sbjct: 557 YIIVDEFQDISVDRYNFLKV----LREGNPP---------AKLYCVGDDWQSIYRFSGSD 603

Query: 596 PKYFMEFTKAFPSPANTRVMLVDNYRCQQQVIDAAEHLVKGTPAIAGKKARASGPAAELP 655
              F +F + F +    ++     YR  + ++  +   ++   A   K   +     +  
Sbjct: 604 MALFNQFPEYFGTTEINKI--ETTYRFGEPLVSLSSRFIQRNNAQIKKDIHSFSSDMKTE 661

Query: 656 GSPVKVFDRDEAALGETLVEHYQRGETVMMLYRKGSDRALMNEHLQSVLHAEA-ALPAEQ 714
                   RD       L++     +++ +L R   D   ++   Q +            
Sbjct: 662 LEFCSYDRRDYCKTIGELIDSIPLDKSIFLLGRYSFDDYYLSFMYQGIKEGNRFYYVIGG 721

Query: 715 RRLRQLTYHSAKGLQADAVFML-------GDCQYLTSSPYKNQVYRQAGLGKAGDAQPFD 767
           R++  LT H +KGL+AD V +L       G    ++  P  N V  ++      D  P+ 
Sbjct: 722 RKIEFLTVHKSKGLEADYVILLQCNKDTYGFPSLVSDDPVLNYVLTKS------DQFPYG 775

Query: 768 TAQKEEVQRLAYVAVTRA 785
                E +RL YVA+TRA
Sbjct: 776 -----EERRLFYVAITRA 788



 Score = 28.9 bits (63), Expect = 0.001
 Identities = 14/61 (22%), Positives = 34/61 (55%)

Query: 132 QWKLIFSDTPSTCVVAGAGAGKSTSLVLRILLLRHYLGYELDAMTVVTFTRESRKDFIKR 191
           Q + I S+  +  VV+ AG+GK++S+V ++  L          + ++++T ++  +  +R
Sbjct: 161 QRRSIVSEEDNCLVVSSAGSGKTSSIVGKVKYLTEIKDIAPHRILLISYTNKAAAELTER 220

Query: 192 L 192
           +
Sbjct: 221 M 221