Pairwise Alignments

Query, 823 a.a., putative helicase, UvrD/REP family from Pseudomonas putida KT2440

Subject, 722 a.a., DNA-dependent helicase II (RefSeq) from Shewanella sp. ANA-3

 Score = 68.6 bits (166), Expect = 1e-15
 Identities = 47/173 (27%), Positives = 82/173 (47%), Gaps = 29/173 (16%)

Query: 536 HLMIDEFQDVSPQIVSWLRACLAEIRRRGPAMHTGRHAQHSSLLCVGDDWQSIYGWRGSS 595
           H+++DEFQD +    +W+R                   Q ++++ VGDD QSIYGWRG+ 
Sbjct: 216 HILVDEFQDTNAIQYAWIRVLAG---------------QTANVMIVGDDDQSIYGWRGAQ 260

Query: 596 PKYFMEFTKAFPSPANTRVMLVDNYRCQQQVIDAAEHLVKGTPAIAGKKARASGPAAELP 655
            +    F + FP+   T + L  NYR +  ++ A+  L+   P   GK+        E  
Sbjct: 261 VENLHRFLRDFPTA--TTIRLEQNYRSKGNILKASNALIANNPERLGKELWTD----EAD 314

Query: 656 GSPVKVF----DRDEAA-LGETLVEHYQRGETV---MMLYRKGSDRALMNEHL 700
           G P+ ++    + DEA  +   + + Y++G  +    +LYR  +   ++ E L
Sbjct: 315 GEPISLYCAFNEMDEARFIVGRINDWYEKGGNLSDCAILYRSNAQSRVLEEAL 367



 Score = 31.6 bits (70), Expect = 2e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 16/71 (22%)

Query: 720 LTYHSAKGLQADAVFMLGDCQYLTSSPYKNQVYRQAGLGKAGDAQPFDTAQKEEVQRLAY 779
           +T HSAKGL+   VFM G          +  ++      + GD       + +E +RL Y
Sbjct: 557 MTLHSAKGLEFTMVFMAG---------VEEGIFPSKMALEEGD-------RLDEERRLCY 600

Query: 780 VAVTRAVQHCY 790
           V +TRA++  Y
Sbjct: 601 VGMTRAMEKLY 611



 Score = 29.3 bits (64), Expect = 8e-04
 Identities = 19/64 (29%), Positives = 33/64 (51%)

Query: 132 QWKLIFSDTPSTCVVAGAGAGKSTSLVLRILLLRHYLGYELDAMTVVTFTRESRKDFIKR 191
           Q + + +   S  V+AGAG+GK+  L  RI  L         ++  VTFT ++  +  +R
Sbjct: 14  QREAVAAPQSSMLVLAGAGSGKTRVLTHRIAWLMQVEQQSPYSILAVTFTNKAAAEMRER 73

Query: 192 LLQV 195
           + +V
Sbjct: 74  VEKV 77