Pairwise Alignments

Query, 331 a.a., D-ribose ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 320 a.a., sugar uptake ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  172 bits (437), Expect = 8e-48
 Identities = 105/308 (34%), Positives = 170/308 (55%), Gaps = 3/308 (0%)

Query: 23  LGTYLGLAGALLAMIVLFSFLSSHFWSYGTFSTLANQIPDLMVLAVGMTFVLIIGGIDLS 82
           L  Y G+  +L+ + ++FSF +  F +   F  +  Q+  + + A GMT+V+++G IDLS
Sbjct: 15  LKQYGGIFLSLVMLCIVFSFFNPRFMTVVNFMNILQQVAVVAIAAFGMTWVILLGEIDLS 74

Query: 83  VGSVLALAASTVSVAILGWGWGVLPSALLGMAVAALAGSITGGVTVAWRIPSFIVSLGVL 142
           VGS++A+A   V      +G G  P+  L +A  AL G + G +T    +PSFIV++  +
Sbjct: 75  VGSIIAVAGM-VGAQCFAFGMGFAPAIALTLAAGALMGMLNGVLTAKLLLPSFIVTVATM 133

Query: 143 EMARGLAYQFTDSRTAYI-GDAYAWFSNPVAFGVSPAFIIALLVIVLAQLVLTRTVFGRY 201
            + RG+    T+   A I  + +         G+     +  ++ V+ Q+VL++T FGR 
Sbjct: 134 GIYRGMVSLPTNGAPAMIENETWTAIGTESFLGLPIIIWVVAVLFVINQIVLSKTSFGRR 193

Query: 202 LIGIGTNEEAVRLAGIDPRPYKVLVFALMGLLAGLAALFQISRLEAADPNAGSGLELQVI 261
               G N EA   +GI     K+L+F + G++A ++ +   SRL +A  NAG   EL  I
Sbjct: 194 AYLTGGNREAAVYSGIKVDRLKILIFMISGVMAAISGVLLSSRLFSAQTNAGMSYELDAI 253

Query: 262 AAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGASEPTKRIITGAVIVIAVVLDT 321
           AA V+GGTSL GG G+++ T  G LII V+  G+  +      + I+ G VI++AV LD 
Sbjct: 254 AAAVLGGTSLAGGVGTMVGTLIGALIIGVMNNGMNMLSVPYFYQLIVKGLVILVAVWLDV 313

Query: 322 YRSRRAGR 329
            R+++A R
Sbjct: 314 -RAKQAKR 320



 Score = 24.6 bits (52), Expect = 0.003
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 21/148 (14%)

Query: 1   MKTTPLNNQDAAPVRRSGTYFGLGTYLGLAGALLAMIVLFSFLSSHFWSYGTFSTLANQI 60
           M + P N   A     + T  G  ++LGL   +  + VLF  ++    S  +F   A   
Sbjct: 139 MVSLPTNGAPAMIENETWTAIGTESFLGLPIIIWVVAVLF-VINQIVLSKTSFGRRA--- 194

Query: 61  PDLMVLAVGMTFVLIIGGIDLSVGSVLALAASTVSVAILGWGWGVLPSALL-------GM 113
                L  G     +  GI +    +L    S V  AI     GVL S+ L       GM
Sbjct: 195 ----YLTGGNREAAVYSGIKVDRLKILIFMISGVMAAIS----GVLLSSRLFSAQTNAGM 246

Query: 114 A--VAALAGSITGGVTVAWRIPSFIVSL 139
           +  + A+A ++ GG ++A  + + + +L
Sbjct: 247 SYELDAIAAAVLGGTSLAGGVGTMVGTL 274