Pairwise Alignments

Query, 331 a.a., D-ribose ABC transporter - permease subunit from Pseudomonas putida KT2440

Subject, 317 a.a., L-arabinose transporter permease from Sinorhizobium meliloti 1021

 Score =  146 bits (368), Expect = 8e-40
 Identities = 101/303 (33%), Positives = 155/303 (51%), Gaps = 12/303 (3%)

Query: 28  GLAGALLAMIVLFSFLSSHFWSYGTFSTLANQIPDLMVLAVGMTFVLIIGGIDLSVGSVL 87
           GL     A  V+ +    +F +      L   +  + V+A  M F L     DLSVGS +
Sbjct: 14  GLLVIFAAAFVVVALTVPNFLTERNMLGLLQSVVTIGVVACTMMFCLASRDFDLSVGSTV 73

Query: 88  ALAASTVSVAILGWGWGVLPSALLGMAVAALAGSITG---GVTVA-WRIPSFIVSLGVLE 143
           A +     +A    G     S +LG+  A   G I G   G+ +A +RI + I +L  ++
Sbjct: 74  AFSGMVAVMASNATG-----SIVLGLLAALACGGIVGLANGIVIARFRINALITTLATMQ 128

Query: 144 MARGLAYQFTDSRTAYIGDAYAWFSNPVAFGV--SPAFIIALLVIVLAQLVLTRTVFGRY 201
           + RG A   +D R   I D   +  +   F    +P +++AL  IV   L L RTVFG+ 
Sbjct: 129 IVRGFALIASDGRAVGINDPVFYQLSLSKFLTVPTPIWVMALFFIVFGFL-LNRTVFGKN 187

Query: 202 LIGIGTNEEAVRLAGIDPRPYKVLVFALMGLLAGLAALFQISRLEAADPNAGSGLELQVI 261
            + IG N EA RLAG+D    ++ +FAL GL+  +A +   SR+ +  PNA +GLEL VI
Sbjct: 188 TLAIGGNPEASRLAGVDVARMRIWIFALQGLVCAVAGVLLASRITSGQPNAATGLELSVI 247

Query: 262 AAVVIGGTSLMGGRGSVISTFFGVLIISVLAAGLAQIGASEPTKRIITGAVIVIAVVLDT 321
           +A V+GG SL GGR ++     GVLI+ +    +  +      + ++ G +++IAV+LD 
Sbjct: 248 SACVLGGVSLAGGRATMTGVVVGVLIMGIAENVMNLLNIQAFYQYVVRGLILLIAVLLDN 307

Query: 322 YRS 324
            RS
Sbjct: 308 MRS 310