Pairwise Alignments

Query, 301 a.a., putative transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 306 a.a., AraC-type DNA-binding domain-containing proteins from Pseudomonas stutzeri RCH2

 Score =  169 bits (429), Expect = 6e-47
 Identities = 109/287 (37%), Positives = 155/287 (54%), Gaps = 7/287 (2%)

Query: 11  APLCSLIRSLTTRPGFVPTLLPQVQVLSWDHYVASSPQIYEPSLMIVAQGSKLARLGPRT 70
           A L  LI  L    G  PT +  + ++           +++P+L I+ QGSK  RLG   
Sbjct: 17  AALARLIDGLVRDDGMHPTAIDDLFLIRCSAPSELVHGLHKPALCIIVQGSKEVRLGDEL 76

Query: 71  LEYGAGHYLVQALSVPFMCETF-ATREAPLLGVAVGIDRGVLGELVQSMGLAPDAEVQAQ 129
             Y A HYLV +++VP       A+   P L + + ID  ++  LV     AP ++    
Sbjct: 77  YTYDALHYLVVSVTVPVAGRVLEASSGEPYLCIRLDIDPAMVATLVAES--APLSQPVEG 134

Query: 130 TPQSMTSAALDAPMRESVERLLHCLQDPLDAKVLGPARVREVLYTALRGPQAGVLR--AL 187
             + +    +DAP+ ++  RL+  L  P D  VL P  +RE+ Y  L G Q   L   A+
Sbjct: 135 PARGVYLDRIDAPLLDATLRLVRLLASPQDIPVLAPLAMREIFYRLLCGRQGRHLHEIAV 194

Query: 188 VEQQGHFARIGAALAHLREHYAEPLSVEALAARANMSVSTFHEHFKRCTDMAPMQYLKRL 247
            + QGH  R+  A+  L  +Y EPL +E LA R N+S ST H  FK  T M+P+QY K+L
Sbjct: 195 RDSQGH--RVTRAIEWLNRNYVEPLRIEELAQRVNLSSSTLHHRFKALTAMSPLQYQKQL 252

Query: 248 RLLKAQQMLIGEGLGVAQAAHRVGYQSTSQFSREYKRQFERSPGDEL 294
           RL +A+++LI EGL V+ A +RVGY+S SQFSREY R F  SP  +L
Sbjct: 253 RLQEARRLLIAEGLDVSSAGYRVGYESPSQFSREYSRLFGASPVKDL 299