Pairwise Alignments

Query, 301 a.a., putative transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 298 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  179 bits (455), Expect = 5e-50
 Identities = 101/271 (37%), Positives = 151/271 (55%), Gaps = 8/271 (2%)

Query: 33  QVQVLSWDHYVASSPQ-----IYEPSLMIVAQGSKLARLGPRTLEYGAGHYLVQALSVPF 87
           + ++   D Y  S+P      + EPS+ +V QG+K   LG +T  Y    +L+ +L +P 
Sbjct: 28  ETEIAGLDFYRQSAPTSCSVCVVEPSIALVVQGAKAMTLGEQTFRYDPSRFLITSLDLPA 87

Query: 88  MCETF-ATREAPLLGVAVGIDRGVLGELVQSMGLAPDAEVQAQTPQSMTSAALDAPMRES 146
             +   A+ EAP LGV + +D  V+ +L+    L    E  +   Q M   A    +  +
Sbjct: 88  KMQVLEASEEAPYLGVVIKLDLAVMSDLMLQTPLTMQKETASD--QGMILGATTPKLLGA 145

Query: 147 VERLLHCLQDPLDAKVLGPARVREVLYTALRGPQAGVLRALVEQQGHFARIGAALAHLRE 206
           + RL++ L +P    VL P   RE+ +  L   Q   LR +V    H  RI   +  L+ 
Sbjct: 146 ISRLVNLLDEPESIAVLAPLIKREIYWRVLMSEQGARLRQIVSAGSHGLRIARTIEWLKV 205

Query: 207 HYAEPLSVEALAARANMSVSTFHEHFKRCTDMAPMQYLKRLRLLKAQQMLIGEGLGVAQA 266
           HY + LSV++LA  A MS STFH HF+R T M+P+QY KRLRLL+A+++++GE +  + A
Sbjct: 206 HYDQHLSVDSLADMARMSKSTFHHHFRRLTSMSPLQYQKRLRLLEARRLMLGEDIDASAA 265

Query: 267 AHRVGYQSTSQFSREYKRQFERSPGDELPYQ 297
           A+RVGY+S SQFSREY R F  SP  ++  Q
Sbjct: 266 AYRVGYESPSQFSREYSRLFGASPKKDVATQ 296