Pairwise Alignments

Query, 301 a.a., putative transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 288 a.a., AraC family transcriptional regulator (RefSeq) from Shewanella loihica PV-4

 Score =  189 bits (479), Expect = 8e-53
 Identities = 113/288 (39%), Positives = 159/288 (55%), Gaps = 14/288 (4%)

Query: 13  LCSLIRSLTTRPGFVPTLLPQVQVLSWDHYVASSPQIYEPSLMIVAQGSKLARLGPRTLE 72
           +  L+  L    G   ++LP +++     Y A  P  Y   +MIV QG K   L  R  +
Sbjct: 4   IAELMSELAPDEGMNDSVLPGIKLFRCSAYGARGPLCYSQGIMIVGQGKKRIYLDNRVFD 63

Query: 73  YGAGHYLVQALSVPFMCETFATREAPLLGVAVGIDRGVLGELVQSMGLAPDAEVQAQTPQ 132
           Y   + LV  + +P  CETFA++E P+L + + ID   L  L+      P  +   + PQ
Sbjct: 64  YDPQNTLVMTVPMPVECETFASKEEPVLVMMIDIDLAQLNRLI------PVMDNHHRVPQ 117

Query: 133 SMTSAALD----APMRESVE----RLLHCLQDPLDAKVLGPARVREVLYTALRGPQAGVL 184
           ++  + L     AP  E++E    RLL  LQ PL+A+ LG A V E+LY  L  P A  L
Sbjct: 118 ALNESRLPGYFIAPTGEAIECSIHRLLQALQSPLEAEALGEAMVLEILYRLLALPNAAPL 177

Query: 185 RALVEQQGHFARIGAALAHLREHYAEPLSVEALAARANMSVSTFHEHFKRCTDMAPMQYL 244
            AL       +RI  AL++L +HYA  + V+ LAA  NMS S FH  FK  T  +P+QYL
Sbjct: 178 YALALSHTRLSRIDKALSYLHKHYAASIEVDQLAALVNMSPSAFHRCFKEVTASSPIQYL 237

Query: 245 KRLRLLKAQQMLIGEGLGVAQAAHRVGYQSTSQFSREYKRQFERSPGD 292
           K++RL KA+++L   G+ V QAA  VGY+S +QFSRE+KR F  SPG+
Sbjct: 238 KKVRLNKAKELLQRPGVKVKQAAIEVGYESPAQFSREFKRYFSHSPGE 285