Pairwise Alignments

Query, 786 a.a., DNA polymerase II from Pseudomonas putida KT2440

Subject, 787 a.a., DNA polymerase II from Vibrio cholerae E7946 ATCC 55056

 Score =  808 bits (2087), Expect = 0.0
 Identities = 424/792 (53%), Positives = 545/792 (68%), Gaps = 11/792 (1%)

Query: 1   MELQQGFVLTRHWHDTPEGTCVEFWLATDAGPRLLRLAAQESVAFIPQAQAEHARVLLAN 60
           M+++QGFVLTRH  D    T +E WLAT +GP  L +  +  V FI Q+ ++    + A 
Sbjct: 1   MKIEQGFVLTRHARDVAGQTQIELWLATPSGPTQLTIRGERPVFFIEQSASQEVMRIAAE 60

Query: 61  ETGT-KLKPLRLKDFEHRPMLGLYTRQHRQLMQLEQRLRTAGIDVFEADIRPPERYLMER 119
            + T  L PL L+ F  +P+   Y    R    L ++L  A + + EADIR  +R+LMER
Sbjct: 61  LSITPSLAPLSLRSFAGQPLAACYCNTIRDSQILAEKLAQADMLILEADIRLADRFLMER 120

Query: 120 FITAPVQFTGQPDAQGVYRDAQLKP--QPGYRPALRLVSLDIETSERGELYSIALEGCGQ 177
           FI   ++FTGQ    G YR  Q     Q  Y P L +VSLDIE SE+G LYSI L+    
Sbjct: 121 FIQGSIEFTGQITDFGHYRQVQQAKCRQGDYLPTLNMVSLDIECSEKGLLYSIGLDSPMD 180

Query: 178 RQVYMLGPANGDASGLDFDLEYCADRAALITRLNQWMARHDPDAIIGWNLVQFDLRLLHE 237
            +V M+G         +  +++  D   L+  L  W  + DPD IIGW++V FD RLLH+
Sbjct: 181 SRVIMIG----QPEPAETPIQWVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLLHK 236

Query: 238 HAKSLQVPLALGRNGAVMTLRSHAGGGHVFADAPGRLLIDGIEALRSATWSFASFSLENV 297
            A+  ++ L +GR       R+ +     F   PGR+++DGI+ L++AT+ F S+SLE+V
Sbjct: 237 RAEFHKLKLTIGRAQQPSFFRTASQTQQGFISIPGRVVLDGIDTLKTATYHFRSWSLESV 296

Query: 298 AQTLLGEGKAIDTPYQRMDEINRRFAEDKPALARYNLKDCELVTRIFAHTRLLDFLLERA 357
           +Q LLGEGKAI   + RMDEIN+ F  DKP+LARYNL+DC LV +IFA T LLDF ++R+
Sbjct: 297 SQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVLVNKIFAATHLLDFAIQRS 356

Query: 358 SVTGLAVDRSGGSVAAFCHLYIPQMHRLGFVAPSLGSRPDEASPGGFVMDSRPGLYDSVL 417
            +TG+ +DR GGSVAAF +LY+PQ+HR G+VAP+L      ASPGG+VMDS PGLYDSVL
Sbjct: 357 RLTGVELDRIGGSVAAFTNLYLPQLHRAGYVAPNLQPENWVASPGGYVMDSIPGLYDSVL 416

Query: 418 VLDYKSLYPSIIRTFLIDPVGLIEGLRQP---DDAHSVEGFRGGRFSRTQHCLPAIVERV 474
           VLD+KSLYPSIIR+FLIDP+GLIEGL+ P      H+V GFRGG+F RT+H LP ++E++
Sbjct: 417 VLDFKSLYPSIIRSFLIDPLGLIEGLKLPIGKQADHAVPGFRGGQFHRTKHFLPEMIEKL 476

Query: 475 WQGREAAKREGNAPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITMRGHQIMRQTRSL 534
           W  R+ AKR      SQA+KIIMN+FYGVLGSSGCRFFD RLASSITMRGH+IM QT+ L
Sbjct: 477 WAARDEAKRNQEKAFSQAIKIIMNSFYGVLGSSGCRFFDARLASSITMRGHEIMIQTKRL 536

Query: 535 IEACGYDVIYGDTDSTFVWLKGAHAEEDAARIGRELVAKVNQWWQAHLHETMNLHSALEL 594
           IEA GY VIYGDTDSTFV L G +++++A  IG  LV ++NQWW  HL +   L S LEL
Sbjct: 537 IEARGYQVIYGDTDSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILEL 596

Query: 595 QFEVHYRRFLMPTIRGTDEGSKKRYAGLVQRADGAEEMVYKGLESVRTDWSPLARQFQQE 654
           ++E HYRRFLMPTIRG++ GSKKRYAGL    D  E++++KGLES RTDW+PLA++FQ +
Sbjct: 597 EYETHYRRFLMPTIRGSETGSKKRYAGLKGDGDN-EQLIFKGLESARTDWTPLAQRFQHQ 655

Query: 655 LYGRVFRSEPYRDYVREYVRRTLAGEQDELLVYRKRLRRPLADYQRNVPPHVRAARLADD 714
           LY  +F  +    Y+R  V +TLAG+ D+ LVY+KRLRR L +YQ+NVPP VRAAR+ADD
Sbjct: 656 LYQLIFHGQDPESYIRTIVEQTLAGQLDDQLVYQKRLRRRLHEYQKNVPPQVRAARMADD 715

Query: 715 YNKRLQRPLQYQRGGWISYVITTAGPEPLENLQAPIDYDHYISRQLLPVADAILPFVGDD 774
            N +L RPLQYQ  G I YVIT  GPEP E  ++PIDY HYI +QL PVADAILPF+G  
Sbjct: 716 INAKLGRPLQYQYRGTIEYVITVNGPEPKEYSKSPIDYQHYIDKQLKPVADAILPFIGKQ 775

Query: 775 FARLTDHQLLLF 786
           F  L   QL LF
Sbjct: 776 FDELIAPQLGLF 787