Pairwise Alignments

Query, 786 a.a., DNA polymerase II from Pseudomonas putida KT2440

Subject, 784 a.a., DNA-directed DNA polymerase from Methanococcus maripaludis JJ

 Score =  135 bits (341), Expect = 7e-36
 Identities = 143/607 (23%), Positives = 270/607 (44%), Gaps = 66/607 (10%)

Query: 197 LEYCADRAALITRLNQWMARHDPDAIIGWNLVQFDLRLLHEHAKSLQVPLALGRNGAVMT 256
           LEY  D   LI R+ + +   D D I  +N   FD   L + A+S  + L LG+N   + 
Sbjct: 193 LEYVKDEKELIKRIIEILK--DYDIIYTYNGDNFDFPYLKKRAESFGLELKLGKNDEKIK 250

Query: 257 LRSHAGGGHVFADAPGRLLIDGIEALRSATWSFASFSLENVAQTLLGEGKAIDTPYQRMD 316
           +    GG +  +  PGR+ ID +  +     +   + LENV + L  + K +D  ++ + 
Sbjct: 251 ITK--GGMNSKSYIPGRVHID-LYPIARRLLNLTKYRLENVTEALF-DVKKVDVGHENIP 306

Query: 317 EINRRFAEDKPALARYNLKDCELVTRIFAHTRLLDFLLERASVTGLAVDRSGGSVAAFCH 376
           ++     E    L  Y+ +D     RI      L+ +  R     L       S     +
Sbjct: 307 KMWDNLDE---TLVEYSHQDAYYTQRIGEQFLPLEIMFSRVVNQSLYDINRMSSSQMVEY 363

Query: 377 LYIPQMHRLGFVAPSLGS------RPDEASPGGFVMDSRPGLYDSVLVLDYKSLYPSIIR 430
           L +   +++G +AP+  S      R   +  GG+V +   G+++ ++ +D+ SLYPSII 
Sbjct: 364 LLLKNSYKMGVIAPNRPSGKEYQKRIRSSYEGGYVKEPLKGIHEDIVSMDFLSLYPSIIM 423

Query: 431 TFLIDPVGLIEGLRQPDDAHSVEGFRGGRF----------------SRTQHCLPAIVERV 474
           +  + P  +       ++    E   G +F                +R +     + E+ 
Sbjct: 424 SHNLSPETIDCTCCANEENGENEEILGHKFCKKSIGIIPKTLMDLINRRKKVKKVLKEKA 483

Query: 475 WQGREAAKREGNAPLSQALKIIMNAFYGVLGSSGCRFFDPRLASSITMRGHQIMRQTRSL 534
            +G    + +      +++K++ N+ YG L     R++    A   T  G Q +++T   
Sbjct: 484 EKGEFDEEYQILDYEQRSIKVLANSHYGYLAFPMARWYSRDCAEITTHLGRQYIQKTIEE 543

Query: 535 IEACGYDVIYGDTDSTFVWLKGAHAEEDAARIGRELVAKVNQWWQAHLHETMNLHSALEL 594
            E  G+ VIY DTD  +     +   +D  ++ ++ + +  + +  +++ T  L   +EL
Sbjct: 544 AENFGFKVIYADTDGFY-----SKWADDKEKLSKDELLEKTREFLKNINNT--LPGEMEL 596

Query: 595 QFEVHYRRFLMPTIRGTDEGSKKRYAGLVQRADGAEEMVYKGLESVRTDWSPLARQFQQE 654
           +FE +++R +  T        KK+YA +    D  E++  KGLE VR DWS +++  Q+ 
Sbjct: 597 EFEGYFKRGIFVT--------KKKYALI----DENEKITVKGLEVVRRDWSNVSKNTQKS 644

Query: 655 LYGRVFRS---EPYRDYVREYVRRTLAGE-QDELLVYRKRLRRPLADYQRNVPPHVRAAR 710
           +   + +    E  +  +++ ++    G+  +E L+   +L + + DY +   PHV  A+
Sbjct: 645 VLNALLKEGSVENAKKVIQDTIKELKDGKVNNEDLLIHTQLTKRIEDY-KTTAPHVEVAK 703

Query: 711 LADDYNKRLQRPLQYQRGGWISYVITTAG---PEPLENLQAPIDYD--HYISRQLLPVAD 765
                 K L+   +   G  ISY+IT+      E  E L+   +YD  +YI  Q+LP   
Sbjct: 704 ------KILKSGNRVNVGDVISYIITSGNKSISERAEILENAKNYDTNYYIENQILPPVI 757

Query: 766 AILPFVG 772
            ++  +G
Sbjct: 758 RLMEALG 764