Pairwise Alignments

Query, 358 a.a., putative Periplasmic sugar-binding protein from Pseudomonas putida KT2440

Subject, 294 a.a., ribose ABC transporter substrate-binding protein RbsB from Vibrio cholerae E7946 ATCC 55056

 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 60/266 (22%), Positives = 113/266 (42%), Gaps = 42/266 (15%)

Query: 16  VANAQPASVVFLNPGLSTETFWTSYTRFMQAAADELGMTLQVQYSERRA--------DLT 67
           VA AQ    + L+       F+ +     +A A ELG  L V  S+           DLT
Sbjct: 22  VAQAQDTVAIVLST--LNNPFFVTMKDGAEAKAKELGYNLIVLDSQNDPSKELSNVEDLT 79

Query: 68  LTQARAILSAPQRPDYLVLVNEQYVAPEILRLSRGTGVKLLLVNNGLTASQRLSIEGQPD 127
           +   +AIL  P   D              +R++  + + +L ++ G +  + +S      
Sbjct: 80  VRGVKAILINPTDSD---------AVSNAIRIANRSKIPVLTLDRGASRGEVVSH----- 125

Query: 128 KYAEPLGTLMSNDEQAGFQML-HLMLAQLPRDAGPVDLVAFAGVKTTPASQLRVEGMRRA 186
                    +++D   G +M  H + A++  DA  + L   AG   T A++ R EG   A
Sbjct: 126 ---------IASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIAG---TSAARERGEGFMNA 173

Query: 187 LADFPQVRLRQVVYGGWNRQRAYEQAKQLLERYPATRLVWSANDQMAFGAMQAFEEAGHT 246
           +    +++L       ++R +     + LL   P  + V++ ND+MA GA++A + +   
Sbjct: 174 VKG-SKMQLLASQPADFDRTKGLNVMENLLAANPDVQAVFAQNDEMALGALRAIQAS--- 229

Query: 247 PGRDVLFAAVNSSPEALRARIDGRLS 272
            G+ V+    + + + + A   G+L+
Sbjct: 230 -GKSVMIVGFDGTDDGIAAVERGQLA 254