Pairwise Alignments

Query, 395 a.a., putative inner membrane transport protein from Pseudomonas putida KT2440

Subject, 388 a.a., arabinose transporter permease from Pseudomonas fluorescens FW300-N2C3

 Score =  326 bits (835), Expect = 8e-94
 Identities = 178/383 (46%), Positives = 245/383 (63%), Gaps = 4/383 (1%)

Query: 12  LFALAIGAFGIGTTEFTPMGLLPVIAQGVEVSIPSAGMLITAYAIGVMVGAPIMTLLFSR 71
           L  LA+ AF IGTTEF  MGLLP +A  + VSIP AG L+T YA+GV +GAP M L  +R
Sbjct: 5   LLILALSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYALGVAIGAPFMALATAR 64

Query: 72  FGKRAALMALMAIFTLGNLLSSLSPDYYTLLASRLVTSLNHGAFFGLGAVVAASVVPKEK 131
             ++AAL+ALM IF +GNLL +++ DY  L+ +R+VT+L HGAFFG+G+VVAA +V   K
Sbjct: 65  LPRKAALVALMGIFIVGNLLCAIASDYNVLMFARVVTALCHGAFFGIGSVVAAGLVAPNK 124

Query: 132 QASAVATMFMGLTIANIGGVPAATWIGQQIGWRMAFAGTAVLGLLAMAALWYALPKGERG 191
           +ASAVA MF GLT+AN+ GVP  T +GQ+ GWR  F    V+G++A+  L   LP     
Sbjct: 125 RASAVALMFTGLTLANVLGVPLGTALGQEAGWRSTFWAVTVIGVIALIGLIRFLPAKRDE 184

Query: 192 SVPHVRKELAVIARPSVLLAMATTVLGAGAMFTLYTYVAPVLAELTGASDGFVTLGLVLI 251
               +R EL  +    + L+++ T L + ++FTL+TYVAP+L E+TG S   VT  LVLI
Sbjct: 185 EKLDMRSELVALKGAGLWLSLSMTALFSASVFTLFTYVAPLLGEVTGVSPRGVTWTLVLI 244

Query: 252 GVGFTLGNSLGGRLADWSLDGAAKIFLAVLALIMLAMPLVLGSHIGAAIALLVWGMFTFA 311
           G+G TLGN +GG+LAD SL          +A++   +     + I + I L +W    FA
Sbjct: 245 GLGLTLGNIIGGKLADKSLANTLMGVFLTMAVVSTVLSWTSVALIPSEITLFLWATACFA 304

Query: 312 VVPPLQMRVMTAAIEAPGLASSINVGAFNLGNAVGAALGGAVISLNLGYAAVPMAGGVLA 371
            VP LQ+ V+T   +AP L S++N+GAFN+GNA+GA +GG+VI   LG  +VP+A G LA
Sbjct: 305 AVPALQVNVVTFGKDAPNLVSTLNIGAFNIGNALGAWVGGSVIDHGLGLTSVPLAAGALA 364

Query: 372 AAGLLLVWL----GGRHKVAGKT 390
              LL+  +    GG   +A  T
Sbjct: 365 VLALLVTLITFRQGGNADLAPAT 387