Pairwise Alignments

Query, 395 a.a., putative inner membrane transport protein from Pseudomonas putida KT2440

Subject, 397 a.a., putative transmembrane efflux transmembrane protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  274 bits (701), Expect = 3e-78
 Identities = 152/378 (40%), Positives = 228/378 (60%), Gaps = 7/378 (1%)

Query: 12  LFALAIGAFGIGTTEFTPMGLLPVIAQGVEVSIPSAGMLITAYAIGVMVGAPIMTLLFSR 71
           LFALA+ AF IGTTEF  +GL+P +A  + +S+PSAG+L++ YA+GV VGAP++T L   
Sbjct: 5   LFALALSAFAIGTTEFVIVGLIPTMAADLNISLPSAGLLVSLYALGVAVGAPVLTALTGS 64

Query: 72  FGKRAALMALMAIFTLGNLLSSLSPDYYTLLASRLVTSLNHGAFFGLGAVVAASVVPKEK 131
           + ++  L+A+MA+F LGNLL+  +P Y TL+ +R++T L HG FF +G+ +A  +V KEK
Sbjct: 65  WNRKRVLLAVMALFVLGNLLAWQAPGYATLVVARVLTGLAHGVFFSIGSTIATGLVAKEK 124

Query: 132 QASAVATMFMGLTIANIGGVPAATWIGQQIGWRMAFAGTAVLGLLAMAALWYALPKG-ER 190
            ASA+A MF GLT+A + GVP  T+IGQ  GW+  F   A+LGLLA+    + +P   ++
Sbjct: 125 AASAIAIMFTGLTVALVTGVPLGTYIGQSFGWQATFLIVAMLGLLALIGSAFLVPGNLKQ 184

Query: 191 GSVPHVRKELAVIARPSVLLAMATTVLGAGAMFTLYTYVAPVLAELTGASDGFVTLGLVL 250
                +  +L V+ +P +LL    T LG G  FT +T++AP+L    G S G + L +++
Sbjct: 185 PPATKLSAQLKVLTQPRLLLVYGITALGYGGTFTAFTFLAPILQTEAGFSAGAIGLIMLV 244

Query: 251 IGVGFTLGNSLGGRLAD-WSLDGAAKIFLAVLALIMLAMPLVLGSHIGAAIALLVWGMFT 309
            GV   +GN  GG++AD      A  +  + LA I+L         + A   +LVWG F 
Sbjct: 245 YGVSVAVGNIWGGKMADKMGPIKALTVIFSGLAAILLVFNFTAYDPVLAVATILVWGAFA 304

Query: 310 FAVVPPLQMRVMTA----AIEAPGLASSINVGAFNLGNAVGAALGGAVISLNLGYAAVPM 365
           F  VP LQ+ V+T     A +A  +AS +N+ AFN+G A+G+  GG +++ + G    P 
Sbjct: 305 FGNVPGLQVYVVTLAEKYAPDAVDVASGLNIAAFNVGIALGSWGGGEIVARS-GLMHTPW 363

Query: 366 AGGVLAAAGLLLVWLGGR 383
            G  +    L L  L G+
Sbjct: 364 VGAAVVLLALGLTRLSGK 381



 Score = 34.3 bits (77), Expect = 6e-06
 Identities = 42/170 (24%), Positives = 63/170 (37%), Gaps = 10/170 (5%)

Query: 10  RVLFALAIGAFGIGTTEFTPMGLLPVIAQGVEVSIPSAGMLITAYAIGVMVGAPIMTLLF 69
           R+L    I A G G T      L P++      S  + G+++  Y + V VG      + 
Sbjct: 201 RLLLVYGITALGYGGTFTAFTFLAPILQTEAGFSAGAIGLIMLVYGVSVAVGNIWGGKMA 260

Query: 70  SRFGKRAAL----MALMAIFTLGNLLSSLSPDYYTLLASRLVTSLNHGAFFGLGAVVAAS 125
            + G   AL      L AI  + N  +     Y  +LA   +      AF  +  +    
Sbjct: 261 DKMGPIKALTVIFSGLAAILLVFNFTA-----YDPVLAVATILVWGAFAFGNVPGLQVYV 315

Query: 126 VVPKEKQASAVATMFMGLTIANIG-GVPAATWIGQQIGWRMAFAGTAVLG 174
           V   EK A     +  GL IA    G+   +W G +I  R     T  +G
Sbjct: 316 VTLAEKYAPDAVDVASGLNIAAFNVGIALGSWGGGEIVARSGLMHTPWVG 365