Pairwise Alignments

Query, 395 a.a., putative inner membrane transport protein from Pseudomonas putida KT2440

Subject, 385 a.a., arabinose efflux permease from Herbaspirillum seropedicae SmR1

 Score =  300 bits (768), Expect = 5e-86
 Identities = 165/374 (44%), Positives = 232/374 (62%), Gaps = 14/374 (3%)

Query: 12  LFALAIGAFGIGTTEFTPMGLLPVIAQGVEVSIPSAGMLITAYAIGVMVGAPIMTLLFSR 71
           LFALA+ AFGIGTTEF  MGLLP +A+ + V+ P+AGML++ YA+GV  GAPI+ +L ++
Sbjct: 5   LFALAVAAFGIGTTEFVIMGLLPDVARDLGVTAPAAGMLVSGYALGVAAGAPILAILTAK 64

Query: 72  FGKRAALMALMAIFTLGNLLSSLSPDYYTLLASRLVTSLNHGAFFGLGAVVAASVVPKEK 131
           + ++ AL+ LM +F LGN+L +L+P+Y  L+ +R+VT+  H AFFG+G+VVAA +V  +K
Sbjct: 65  WPRKQALVGLMCLFILGNVLCALAPNYVFLMVARVVTAFCHAAFFGIGSVVAAELVAPQK 124

Query: 132 QASAVATMFMGLTIANIGGVPAATWIGQQIGWRMAFAGTAVLGLLAMAALWYALPKGERG 191
           +A AVA MF GLT+ANI GVP  T  G   GWR  F     +G+LA   LW  LPK    
Sbjct: 125 RAQAVALMFTGLTVANILGVPLGTAFGHAAGWRSTFGAVTAIGVLAAIMLWTMLPKKIPM 184

Query: 192 SVPHVRKELAVIARPSVLLAMATTVLGAGAMFTLYTYVAPVLAELTGASDGFVTLGLVLI 251
              ++ +E   I    V L++ T+ L + +MF++ TY+A +L ++TG +    +  L+L 
Sbjct: 185 QAGNIFQEFRSIIDTRVQLSLLTSTLASISMFSVITYIAYILLDVTGFTTQQESWVLLLF 244

Query: 252 GVGFTLGNSLGGRLADWSLDGAAKIFLAVLALIMLAMPLVLG-----SHI--GAAIALLV 304
           G G T+G  +GG+LADW L       + V+  + L + +VLG     SH        +  
Sbjct: 245 GAGITVGGLVGGKLADWKL-------MPVMCGVFLCIAVVLGLFSITSHYKWPTLATMFA 297

Query: 305 WGMFTFAVVPPLQMRVMTAAIEAPGLASSINVGAFNLGNAVGAALGGAVISLNLGYAAVP 364
           WG F FAVVP  Q+RV+  A  AP LAS++N GAFNLGNA GA +GG  IS  L    +P
Sbjct: 298 WGAFAFAVVPGAQIRVLDTARGAPNLASTLNQGAFNLGNATGAWVGGLAISAGLPLTDLP 357

Query: 365 MAGGVLAAAGLLLV 378
           + G   A  GL  V
Sbjct: 358 LIGAFFALLGLATV 371