Pairwise Alignments

Query, 257 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 255 a.a., transcriptional regulator, AraC/XylS family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  122 bits (305), Expect = 9e-33
 Identities = 69/223 (30%), Positives = 110/223 (49%), Gaps = 1/223 (0%)

Query: 35  HSHTKHQLIYAIKGLMIVESGNECWTVPPSRGVWMPCGQVHAIRCVGDVKMRSVFVRSDA 94
           H H K QL+YA  G M     +    +PP+R  W+P G  H +     V  RS++   +A
Sbjct: 34  HHHHKAQLLYASAGCMRFSLADTQVVLPPTRAAWLPAGVEHHVTMRNVVAYRSLYFEPEA 93

Query: 95  ATGLPLQSKAISISPLLSELIKASVGFTAPFAEDSREARVMRLILDEICVLPTLPLKLSQ 154
              LP +     ++PLL  LI  ++ +         +     L  +E+       L L  
Sbjct: 94  VASLPSEVTIFHVNPLLKALID-TMSYWPWNKPRYSQHNAFALFCEELENAKAENLALPL 152

Query: 155 PSDQRLRVICTALHERPEDNATVADWGLRLGVDEKTIQRLFRKETGMTFGQWRQQARLMQ 214
           P D+RL+     + ++    A + +  + +G  E+TI R+F  +TGM +  WRQQ RL+ 
Sbjct: 153 PQDKRLQTWLKQVLQQEMQPANLKEMAIEIGASERTISRIFSSQTGMAYQAWRQQWRLLS 212

Query: 215 ALERIALGERIIDVAGALGYDSPSAFASMFKRQFGTTPSQFFR 257
           A+E++A G  +      L + S SAF S FK+  GTTP+Q+F+
Sbjct: 213 AIEQLAAGTSVAQAGFNLQFSSDSAFISFFKQYTGTTPAQYFK 255