Pairwise Alignments

Query, 492 a.a., Methyl-accepting chemotaxis transducer from Pseudomonas putida KT2440

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  224 bits (570), Expect = 7e-63
 Identities = 147/386 (38%), Positives = 221/386 (57%), Gaps = 9/386 (2%)

Query: 110 RGAQVLRNG---DQQLAVLAQSPSLRQVFFDR-FSNYAVCVLILMLAMLGASQLLIRFLL 165
           RGA  LR+     ++LA+LA + +   V      +   +   +  LA+ GA+ +     L
Sbjct: 137 RGAPTLRSSVGLRERLALLAAAGAAGGVVVGTVLAASPIAATLAGLALGGAAAVAAATAL 196

Query: 166 SQLNTLKDVMLHVEKTGD--LSARVPLASGDEVGQMAGAFNAMQSTYHRVVSTVAHSAAQ 223
             L+ L        + GD  +S  +     DE+GQ+  A   +++    +V  +A S+ Q
Sbjct: 197 LPLSRLAR---QARQVGDNPVSQLIYTGRRDEIGQIEFAMKMLETEAGAMVGRIADSSRQ 253

Query: 224 LDSGAARLAASMSDVRHGMLGQQSETDQAATAINEMSATVHHIAQHAGATRDLSQTADTL 283
           L   A  L  +M         QQ ETD  ATAI +MSA+V  +A +A  T +++  AD+ 
Sbjct: 254 LSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSASVQEVALNAQRTAEVAARADSE 313

Query: 284 AGSGQAVVSRVQDSISGLSSGVQQTAEMIRQLAEDSQKINGVVSVIHSIAEQTNLLALNA 343
           A  G+ VV R   SI+ L++ +QQ AE+I QL   SQ+I+ V+ VIH IAEQTNLLALNA
Sbjct: 314 AAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEISRVLDVIHGIAEQTNLLALNA 373

Query: 344 AIEAARAGDLGRGFAVVADEVRNLAKRVQTSTDEITTMVSALQSGTRDAVEFMQESSYKA 403
           AIEAARAG+ GRGFAVVADEVR LA R   +T +I  M+ +LQ+G R+AV+ MQ S  +A
Sbjct: 374 AIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMIGSLQTGAREAVDVMQRSREQA 433

Query: 404 DDCVRQAQEAGEALAEITGAVAQMRESNTQIAVAAEQQSQVAEEMNRAVVSIRDVTERTV 463
           +  V  A +A  +L+ I   V ++   ++QIA A +QQS V EE+++++VSIR  ++  V
Sbjct: 434 EHSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVDQQSSVGEEISQSIVSIRGSSDEHV 493

Query: 464 QQTVGSATTSSELATLAGELNKAIGQ 489
              + S   ++ +A LA  + + + Q
Sbjct: 494 ASGLHSQRNATGVALLADGMLELVQQ 519