Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 335 a.a., Site-specific recombinase XerD from Pseudomonas stutzeri RCH2

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 72/321 (22%), Positives = 124/321 (38%), Gaps = 28/321 (8%)

Query: 17  RNDRYRQTFATEEEAKADEARELARRATLPKAVRGEGTGTISPLKSRKTLQEAYDLTFRL 76
           +  R+R+T  T+ EA   EA   A+ +        E        K ++ L E  +L F L
Sbjct: 25  KGKRFRKTLKTKAEAMRFEATCRAKCS--------ESNDWAPRPKDKRRLSELVELWFDL 76

Query: 77  EWKGGKSEKTMTLNGGNVLKALGADTLLSDITTEAITEMVLEFEDLGNSGSTVNRKLSLL 136
                              KA+G D +   +    I      +   G +G T N +L  L
Sbjct: 77  HGVSLSDGVRRVAILRACAKAMG-DPIARMVDGAKIAATRARWMLAGVTGKTANNRLGYL 135

Query: 137 SMVLKT-----AVNHNWLLSVPRMIRRKEGKHRIRWMNTEEEGNVLKACQHLGLNCLHDF 191
             V         +++    +  R +R +E    + ++   +   +L A Q       H  
Sbjct: 136 KAVYNELHKLDVIDYPCPFTRIRPVRLQE--RPLAYLTKPQISELLDALQ-ARTTSPHPA 192

Query: 192 II--VAVDTGFRRAELLGLSAPDFQEGMIHLYAGQTKNGDARAIPATSRVARILHRRRMN 249
           ++  + + TG R  E   L     +     L    TK+   R +P T  +A  + +    
Sbjct: 193 MVARICLATGARWGEAQALRLERIRGNA--LVFANTKSKRVRMVPVTPELAAAIKKHWQT 250

Query: 250 LTTFEG-LTVSSLRHQWATLRAYMGMEEDPQFIVHMLRHTCASRLVQRGVPLASVQHWMG 308
              F   + V  L     +++   G         H+LRHT A+  +  G  + +++  +G
Sbjct: 251 YGPFTNCIGVFRLVLLSTSIKPPRGQAS------HILRHTFAAHFIMGGGHIVTLKEILG 304

Query: 309 HKNINTTLRYAHLAPENLMQA 329
           H ++N T+RYAHLAPE+L  A
Sbjct: 305 HASLNMTMRYAHLAPEHLSDA 325