Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 302 a.a., site-specific tyrosine recombinase XerD from Vibrio cholerae E7946 ATCC 55056

 Score = 45.4 bits (106), Expect = 2e-09
 Identities = 43/152 (28%), Positives = 70/152 (46%), Gaps = 22/152 (14%)

Query: 198 TGFRRAELLGLSAPDF--QEGMIHLYAGQTKNGDARAIP----ATSRVARILHRRRMNLT 251
           TG R  EL+ L+  +   ++G++ +     K G  R +P    A   +   L + R  L 
Sbjct: 149 TGLRVTELVSLTMENMSLRQGVVRVMG---KGGKERLVPMGENAIEWIETFLQQGRSLLL 205

Query: 252 ---TFEGLTVSSLRHQ------WATLRAYM---GMEEDPQFIVHMLRHTCASRLVQRGVP 299
              T + +  SS   Q      W  ++ Y    G++ + +   H+LRH  A+ L+  G  
Sbjct: 206 GEQTSDIVFPSSRGQQMTRQTFWHRIKHYAVIAGIDVE-KLSPHVLRHAFATHLLNYGAD 264

Query: 300 LASVQHWMGHKNINTTLRYAHLAPENLMQARN 331
           L  VQ  +GH +++TT  Y H+A E L Q  N
Sbjct: 265 LRVVQMLLGHSDLSTTQIYTHVATERLKQLHN 296