Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 389 a.a., site-specific recombinase XerD from Dechlorosoma suillum PS

 Score = 73.9 bits (180), Expect = 7e-18
 Identities = 61/215 (28%), Positives = 105/215 (48%), Gaps = 12/215 (5%)

Query: 125 SGSTVNRKLSLLSMVLKTAVNHNWLLS---VPRMIRRKEGKHRIRWMNTEEEGNVLKACQ 181
           S +TV   L+LLS + + A N   + +   V  + + K    R R +   EE  +++ C 
Sbjct: 75  SPATVRLDLALLSDLFRIAKNEWGICNDNPVANVRKPKLPPGRDRRLAPREERMIMRHCS 134

Query: 182 HLGLNCLHDFIIVAVDTGFRRAELLGLSAP--DFQEGMIHLYAGQTKNGDARAIPATSRV 239
             G + +   + +A++T  R+ E+LG+     + +  ++HL    TKNG  R IP +   
Sbjct: 135 QRGAHEMKAIVQLALETAMRQGEILGVCWEHINLKSRIVHL--PDTKNGSKRDIPLSMEA 192

Query: 240 ARILHRRRMNLT-TFEGLTVSSLRHQWATLRAYMGMEEDPQFIVHMLRHTCASRLVQRGV 298
             IL  +R+ L+      T + L+  W ++   + +   P    H LRH   SRL++RGV
Sbjct: 193 RDILAAQRVKLSGRVFSYTNNGLKSSWRSMIKRLNI---PDLHFHDLRHEAISRLMERGV 249

Query: 299 -PLASVQHWMGHKNINTTLRYAHLAPENLMQARNA 332
             L  V    GHK+++   RY HL  + L++  +A
Sbjct: 250 FNLMEVAAISGHKSLSMLKRYTHLRAQRLVRKLDA 284