Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 358 a.a., site-specific recombinase XerD from Dechlorosoma suillum PS

 Score = 60.1 bits (144), Expect = 9e-14
 Identities = 67/276 (24%), Positives = 122/276 (44%), Gaps = 42/276 (15%)

Query: 81  GKSEKTMTLNGGNVLKALGADTLLSDITTEAITEMVLEFEDLGNSGSTVNRKLSLLSMVL 140
           G+  +T  +N   +LK   +   +S ++  A+++ +   + L +S +TV R++ ++S  +
Sbjct: 78  GRDAETFRINA--LLKDRISSYKMSALSGSALSDFIARRQKLVSS-ATVRREIDIISSAV 134

Query: 141 KTAVNHNWLLSVPR-----MIRRKEGKHRIRWMNTEEEGNVLKACQ-----HLGLN---- 186
            T     W + +P      + R +  K R R +N +EE  +++A +     H G      
Sbjct: 135 -TKARKAWGIHLPENPVALIERPRPAKARERRLNWDEETRLMQALEDHADDHEGSKQYRK 193

Query: 187 -----CLHDFIIVAVDTGFRRAELLGLSAPD--FQEGMIHLYAGQTKNGDARAIPATSRV 239
                 +  F+ +A+ T  RR ELL L   D   +E   HL   +TKNGDAR +P +S  
Sbjct: 194 GSRNPWIKPFVQLAIHTAMRRGELLSLRWEDVSLEERTAHL--PETKNGDARTVPLSSLA 251

Query: 240 ARILHRRRMNLTTFE-GLTVSSLRHQWATLR-----------AYMGMEEDPQFI---VHM 284
           A  L +   + +     +T  +++  +   R              G   D + +   +H 
Sbjct: 252 AATLRQLPHDPSGLVFPITADAVKKGFERARNRARADYVAECERNGTRPDDRLLDLRLHD 311

Query: 285 LRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAH 320
           LRH   SR+ ++   +  +    GHK+I    RY H
Sbjct: 312 LRHEATSRIAEKLDNILELSAVTGHKDIRMLKRYYH 347