Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 328 a.a., site-specific integrase from Methanococcus maripaludis S2

 Score = 50.4 bits (119), Expect = 6e-11
 Identities = 57/233 (24%), Positives = 102/233 (43%), Gaps = 45/233 (19%)

Query: 125 SGSTVNRKLSLLSMVLKTAVNHNWLLSVPRMIRRKEGKHRIRWMN-----------TEEE 173
           S +T NR  +LL +  +     N+      M  R E   R R+ +           TE++
Sbjct: 88  SKNTQNRYFNLLKVFYRAFKLDNF------MDFRDESNERKRFSSSRIEVKHYDAITEQD 141

Query: 174 GNVL--KACQHLGLNCLHDFIIVAV--DTGFRRAELLGLSAPD--FQEGMIHLYAGQTKN 227
            N++  K  ++     + D +++ +  DTG R +E+L L   D  F+ G   L    TK+
Sbjct: 142 LNLVIAKIFENQSSTKIRDLVVIRMLWDTGARVSEVLNLKYEDCDFENGEFRLR--NTKS 199

Query: 228 GDARAIPATSRVARILHRRR------------MNLTTFEGLTVSSLRHQWAT-------- 267
            + R +  +S    +L                   T  E L   + R+Q           
Sbjct: 200 HEERKVVCSSDTLELLKCLASYNFKKEPKDYLFQSTNQENLGKIADRNQITRTFGRAVDK 259

Query: 268 LRAYMGMEEDPQFIVHMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAH 320
           L+    ++++ +++VH LRH  A  L+ +GVP+  V+  +GH+++ TTL Y+H
Sbjct: 260 LKEEEKIQQNKRYVVHSLRHGRAVDLLNKGVPIDVVKEILGHRSLETTLYYSH 312