Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 182 a.a., site-specific integrase from Methanococcus maripaludis S2

 Score = 41.6 bits (96), Expect = 2e-08
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 4/130 (3%)

Query: 201 RRAELLGLSAPDFQ--EGMIHLYAGQTKNGDARAIPATSRVARILHRRRMNLTTFEGLTV 258
           R +ELL +   +    EG+  L   +T+N     IP         H    NL   + L  
Sbjct: 40  RVSELLTIEVKNINLNEGVCKLLDTKTENFQICVIPEWLNEDIFGHIVDNNLKDDDRLFK 99

Query: 259 SSLR-HQWATLRAYM-GMEEDPQFIVHMLRHTCASRLVQRGVPLASVQHWMGHKNINTTL 316
              R + W  ++ Y    +   +F  H  R + A  L+  GVPL  V  ++ HK+INTT+
Sbjct: 100 FKNRTYAWELVKKYTKDAKIHKEFSTHTFRRSRALHLLNDGVPLEKVSKYLRHKSINTTM 159

Query: 317 RYAHLAPENL 326
            Y  +  +++
Sbjct: 160 HYLKITVDDI 169