Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 322 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis JJ

 Score = 51.6 bits (122), Expect = 3e-11
 Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 21/143 (14%)

Query: 197 DTGFRRAELLGLSAPD--FQEGMIHLYAGQTKNGDARAIPATSRVARIL-HRRRMNL--- 250
           DTG R +E L ++  D  F EG+  L    TK  + R +  +      L H  R N+   
Sbjct: 166 DTGARLSESLNITYGDCDFNEGLFKLR--DTKGSEERMVTCSGDTLEALKHYCRFNVLQG 223

Query: 251 ---TTFE----------GLTVSSLRHQWATLRAYMGMEEDPQFIVHMLRHTCASRLVQRG 297
              T F+          G      +     L+    + ++ + +VH LRH  A  L+ +G
Sbjct: 224 PEDTIFQTNKGGRIVKVGWIGQVFKSTIDELKQEGKIPKNKRIVVHSLRHGRAVDLLDQG 283

Query: 298 VPLASVQHWMGHKNINTTLRYAH 320
           +P+  V+ ++GHK+I TTL YAH
Sbjct: 284 IPIEIVKEYLGHKSIETTLFYAH 306