Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 376 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 58.2 bits (139), Expect = 4e-13
 Identities = 60/245 (24%), Positives = 113/245 (46%), Gaps = 20/245 (8%)

Query: 103 LLSDITTEAITEMVLE--FEDLGNSGSTVNRKLSLLSMVLKTAVNHNW--LLSVP-RMIR 157
           +L D+   A+T   +E  F+ +  S    NR L LLS++++ A  + +    S P +  +
Sbjct: 128 VLGDVPLAALTRQHIEQWFDGMHASKGMANRLLPLLSVMMQQAEVYEYRPAQSNPCKGFK 187

Query: 158 RKEGKHRIRWMNTEEEGNVLKACQ-HLGLNCLHDFII-VAVDTGFRRAELLGLSAPDFQE 215
           R +  H  R+++ EE   +  A   H   + +   ++ + + TG R  E+  +   D+++
Sbjct: 188 RYKSTHSERYLSEEELKRLWLALDSHEKASPVAVMVLRLLILTGCRCNEVCSVKWADYRQ 247

Query: 216 GMIHLYAGQTKNGDARAIPATSRVARIL-------HRRRMNLTTFEGLTVSSLRHQWATL 268
           G  H Y   +K G A+ +  +S    +L            + +  +  T + L   W   
Sbjct: 248 G--HWYLPDSKTG-AKTVFLSSFARELLSDWPQVSEHLFWHQSPSQPFTPACLDRFWRPF 304

Query: 269 RAYMGMEEDPQFIVHMLRHTCASRLVQRGVPLASVQHWMGHKNINTTLRYAHLAPENLMQ 328
           R  + + +     +H LRHT AS  V+  + + ++   +GH    TTL+Y HLA  ++ Q
Sbjct: 305 RETIHLND---VRIHDLRHTYASIAVKHNINILTIGRLLGHALPETTLKYTHLAKRDVQQ 361

Query: 329 ARNAL 333
           A N +
Sbjct: 362 AANVV 366