Pairwise Alignments

Query, 360 a.a., putative integrative genetic element Ppu40, integrase from Pseudomonas putida KT2440

Subject, 394 a.a., site-specific recombinase, phage integrase family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 20/154 (12%)

Query: 188 LHDFIIVAVDTGFRRAELLGLSAPDFQ--EGMIHLYAGQ----TKNGDARAIPATSRVAR 241
           LHD I++++DTG R  EL+ L   D     G I +Y+G     TK G  R + A    A 
Sbjct: 224 LHDMILISLDTGMRAGELVRLRTEDIDVDHGTIRIYSGSDAGITKGGRTRIVHAGHLFAE 283

Query: 242 ILHRRRMNLTT----FEG---------LTVSSLRHQWATLRAYMGMEEDPQFIV-HMLRH 287
            +   R  + +    F G             ++ H  ATL     + +D   IV H LRH
Sbjct: 284 SITMLRRRVGSPGLLFPGRGGAVRNTTAVSRAMAHICATLGLNADVTDDRNRIVWHTLRH 343

Query: 288 TCASRLVQRGVPLASVQHWMGHKNINTTLRYAHL 321
           T A+R+++ G+ + +++  +GH ++  T RY HL
Sbjct: 344 TYATRMLEAGIDIYTLKELLGHSSVAVTERYLHL 377