Pairwise Alignments

Query, 562 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 642 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain from Pseudomonas stutzeri RCH2

 Score =  355 bits (912), Expect = e-102
 Identities = 210/548 (38%), Positives = 304/548 (55%), Gaps = 17/548 (3%)

Query: 11  AAAIFSET-------DLRGNITYVNQQFCSISGYSREELLGANHRILNSGLHEPTFFVGM 63
           AAA+F  T       D R  I +VN  F  I+GYS EE+LG   ++  SG H+  F+  M
Sbjct: 82  AAAVFDSTQEGVLVTDPRQRIVHVNPAFSRITGYSTEEVLGQTPKLFASGKHDAEFYQQM 141

Query: 64  WRALVAGRVWKGEICNRSKDGSLY--WVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLL 121
           W AL     W GEI NR K+G +Y  W +   +  +    GQ+  YV++  D++  ++  
Sbjct: 142 WLALKDKGEWSGEIWNRRKNGEVYPQWQN---LRCIHDNQGQLSHYVAVFSDLSALKRSR 198

Query: 122 HTLQWRVGHDVLTGLPNRAYLSDLLNQALAYSRCEGISLAVCMLDLDGFKAVNDGYGHAV 181
             L     +D L  LPNR   ++   Q L  +R    S A+ ++DLD FK +N+  GH++
Sbjct: 199 EELDQLAHYDPLVNLPNRLLFTERAKQDLERARAHKRSGALLLIDLDHFKDINESLGHSL 258

Query: 182 GDLLLVEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAAPCVV 241
           GD LL  V+ RL   L  G  + RL GDEF L+      E     AL R+L  L     +
Sbjct: 259 GDALLQAVSTRLSEHLEKGMTLGRLGGDEFALLCEGYGAEKATALAL-RILDRLNESFHI 317

Query: 242 REHTLSLSASIGVTLYPQ--DDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQELKA 299
            +  L  SASIG+ LYP   D ++A+ L+R+AD A++ AK  GR+ Y  +      + + 
Sbjct: 318 GDQELFSSASIGIVLYPYPTDVQNAEQLMRNADSALFKAKSSGRSTYAFYSEELTSQARQ 377

Query: 300 THQTVARVRRALRNGELCLYYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWVEQ 359
             + V  +R+AL  G+L L+YQP  +LR G + GFE L+RWQ P +G++ PG F+P  E+
Sbjct: 378 RVELVTALRQALEQGQLRLHYQPIYDLRQGTISGFEALVRWQHPEKGLIAPGVFIPIAEE 437

Query: 360 TDLIVEIGEWVIGQALSQLQAWQRQGQPWS-LSVNIAARHLQRSDFAERLQQLLAAYPAV 418
           T LI  I  WV+ QA +Q + W  QG P   ++VNI++R     +   ++  +LA    +
Sbjct: 438 TGLISAIDHWVLEQACNQAREWLGQGHPLGFIAVNISSRLFGNGELDLQVATILAR-SGL 496

Query: 419 DPALLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQTIKI 478
           +   L+LEI ES  + +       L   RALGV+ ++DDFGTGYSSL  LKR+    +KI
Sbjct: 497 EARHLELEITESAVMQDPDAALELLQRLRALGVQLAIDDFGTGYSSLQRLKRMNVHKLKI 556

Query: 479 DQSFVRDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGYCIA 538
           DQ FVR +  D+DD A+T +VIGLA   G +V+AEG+E+ E    L+   C+  QGY  A
Sbjct: 557 DQGFVRGLPDDRDDAAITRSVIGLAHNLGLKVVAEGIETAEQAAFLLAQNCDYGQGYGFA 616

Query: 539 RPMPASDV 546
           RP PA  +
Sbjct: 617 RPQPADAI 624