Pairwise Alignments

Query, 562 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1010 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  356 bits (913), Expect = e-102
 Identities = 207/534 (38%), Positives = 303/534 (56%), Gaps = 4/534 (0%)

Query: 10  DAAAIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLHEPTFFVGMWRALVA 69
           +++   S  D +G+I  +N  F +I+GYS+EE L  N RIL S     + +  M  A+  
Sbjct: 464 NSSEAMSVQDHKGHIITINAAFTAITGYSQEEALTQNIRILQSSRTPRSQYDEMNSAIRD 523

Query: 70  GRVWKGEICNRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLLHTLQWRVG 129
              W+GE+  ++K G  Y V  T+  + D   GQV + V++  D+TEK++  H +  +  
Sbjct: 524 TGYWQGELWIKNKSGEEYMVWLTINTIFDQ-HGQVYRRVALFSDITEKKEAEHIIWKQAN 582

Query: 130 HDVLTGLPNRAYLSDLLNQALAYSRCEGISLAVCMLDLDGFKAVNDGYGHAVGDLLLVEV 189
           +D LTGLPNR  L + LN  +          A+  LDLD FK VND  GH +GDLLL E 
Sbjct: 583 YDPLTGLPNRRMLLEYLNTEILRIDRNHSHFALMFLDLDFFKEVNDTLGHDMGDLLLQET 642

Query: 190 AQRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAAPCVVREHTLSLS 249
           A+RLK  +R  D VARL GDEF ++L  +D    +    Q +L  +A P  + + T  +S
Sbjct: 643 AKRLKGCIRESDVVARLGGDEFTVVLSGIDSPSGVERVAQSILERIAEPYSLGDETAYIS 702

Query: 250 ASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQELKATHQTVARVRR 309
           ASIG+T+YP D    + L++HADQAMY AK++GRNR+H F  S ++  +     +  +R 
Sbjct: 703 ASIGITIYPDDATSIEGLLKHADQAMYAAKEQGRNRFHYFTPSMQEYARYRMALIKDLRN 762

Query: 310 ALRNGELCLYYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWVEQTDLIVEIGEW 369
           A+   E  L+YQP V++    V   E L+RW  P RG+V PG+F+P  E+T LI EIG W
Sbjct: 763 AINRKEFELFYQPIVDMNKLGVYKAEALIRWVHPQRGLVSPGEFIPVAEETGLINEIGNW 822

Query: 370 VIGQALSQLQAWQRQGQPWSLSVNIAARHLQRSDFAERLQQLLA--AYPAVDPALLDLEI 427
           V  +A  Q   W+ Q     + ++I    +Q  D  +     LA   +  +    + +EI
Sbjct: 823 VFEKAAQQSARWRTQ-HGVEIQISINKSPIQFRDEGDTFSDWLALLRHLELSSNAICVEI 881

Query: 428 VESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQTIKIDQSFVRDIL 487
            E + +D    V+  L A R  G++ SLDDFGTGYSSL+YLK+     +KIDQSF R++ 
Sbjct: 882 TEGLLLDASMGVTDKLLAYRDAGIQVSLDDFGTGYSSLAYLKKFDIDYLKIDQSFTRNLE 941

Query: 488 HDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGYCIARPM 541
            D D +AL EA+I +A   G +VIAEG+E+     +L   GC+ AQGY  ++P+
Sbjct: 942 SDSDGVALCEAIIVMAHKLGIKVIAEGVETQFQHDILASAGCDFAQGYLYSKPV 995