Pairwise Alignments

Query, 562 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 816 a.a., response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella loihica PV-4

 Score =  326 bits (836), Expect = 2e-93
 Identities = 172/465 (36%), Positives = 277/465 (59%), Gaps = 2/465 (0%)

Query: 81  SKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLLHTLQWRVGHDVLTGLPNRA 140
           S DG+ + ++ +  P+ D   G+V   + +  D +E   +   +     HD LT LPNR 
Sbjct: 347 SLDGTTFQIEDSAAPITDS-EGKVTGGIIVFHDCSESVAMSLKMSHLANHDQLTDLPNRI 405

Query: 141 YLSDLLNQALAYSRCEGISLAVCMLDLDGFKAVNDGYGHAVGDLLLVEVAQRLKSILRGG 200
            L D +N A A +     S+A+ ++D+D FK +ND  GH+ GD ++ +VA+RL+S++   
Sbjct: 406 LLHDRINHACAVADSYDKSVALMLIDIDHFKYLNDSLGHSYGDQVIKQVAKRLQSLIDPN 465

Query: 201 DAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAAPCVVREHTLSLSASIGVTLYPQD 260
             + R+ GDEFVL+L  +    Q+ +    ++R+L  P  +     +LS S+G+++YP D
Sbjct: 466 ATLGRIGGDEFVLLLPSLTATSQVDSIATDIVRSLNTPFRIDGQEYTLSVSVGISIYPSD 525

Query: 261 DEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQELKATHQTVARVRRALRNGELCLYY 320
              A+ L+ H D AMY AK  GRNR+  F    EQEL   H+ V  +R A+    + +YY
Sbjct: 526 ALRAEELMTHVDAAMYRAKDLGRNRFCYFSEDLEQELTKRHELVTLLRTAIDTEAIEVYY 585

Query: 321 QPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWVEQTDLIVEIGEWVIGQALSQLQA 380
           QPKV+L+T +++G E L R   P   ++ P DF+P  E+T LI ++GE ++ Q+    +A
Sbjct: 586 QPKVDLKTKEIIGAEALARLYDPSGKLISPLDFIPLAEETGLIHQLGEIILKQSCMAAKA 645

Query: 381 WQRQGQPWSLSVNIAARHLQRSDFAERLQQLLAAYPAVDPALLDLEIVESVAIDNLQHVS 440
           WQ++G+P  ++VNIAA+     +F + + ++L     +D + L+LE+ ES  + +     
Sbjct: 646 WQKRGRPLQIAVNIAAKQFTNPEFCDSVAKVL-ELTGLDSSFLELEVTESSLMYDFDEAL 704

Query: 441 RCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQTIKIDQSFVRDILHDQDDLALTEAVI 500
             L+   +LG+  ++DDFGTGYSSLSYLK  P  T+KIDQSFV+D+L D+  L + +AVI
Sbjct: 705 NVLNTLSSLGLSIAIDDFGTGYSSLSYLKFFPVNTLKIDQSFVKDMLGDEQSLDIVKAVI 764

Query: 501 GLARAFGREVIAEGLESVEHGRVLMGLGCELAQGYCIARPMPASD 545
            LA++   ++IAEG+E  E  + L+ L CE  QGY  ++P+P  +
Sbjct: 765 HLAKSLKLKLIAEGIEDAEQLQKLVALECEQGQGYMFSKPLPLKE 809