Pairwise Alignments

Query, 562 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 874 a.a., PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein from Dechlorosoma suillum PS

 Score =  399 bits (1026), Expect = e-115
 Identities = 220/547 (40%), Positives = 325/547 (59%), Gaps = 8/547 (1%)

Query: 6   RAAVDAAAIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLHEPTFFVGMWR 65
           RA   + A    TD  G I YVN +F   +GYS EE +G    +L SG      +  +W 
Sbjct: 327 RAVEQSPATIVITDTNGVIEYVNPKFTRTTGYSAEEAVGLKPSVLKSGETPLEVYQELWS 386

Query: 66  ALVAGRVWKGEICNRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLLHTLQ 125
            + +G  W+G   NR ++G LYW  +T+ P+ D    ++  +V+++ D+TEKR+    + 
Sbjct: 387 TIASGGQWEGVFHNRRRNGELYWEHATISPITDD-NQRITHFVAVKEDITEKRRQEDRIH 445

Query: 126 WRVGHDVLTGLPNRAYLSDLLNQALAYSRCEGISLAVCMLDLDGFKAVNDGYGHAVGDLL 185
                D LTGLPNR  L D ++Q LA +  E  +LA+  +DLD FK VND  GH  GD L
Sbjct: 446 QLAYFDELTGLPNRTLLHDRVSQCLAAAEREQETLALLFIDLDNFKTVNDSLGHFTGDRL 505

Query: 186 LVEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAAPCVVREHT 245
           L  VAQRLK  +R  D V+RL GDEFV++L D   +     A ++++  +  P V+  H 
Sbjct: 506 LQSVAQRLKGCVRDSDTVSRLGGDEFVVVLADAQLDGASQVA-RKIIDRVGQPFVIDGHQ 564

Query: 246 LSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQELKATHQTVA 305
           L+++ SIG++L+P D  D  +L+++AD AMY AK+ GRN Y  F  + E  + A  + V 
Sbjct: 565 LTVTPSIGISLFPHDARDFQSLLKNADTAMYQAKESGRNAYQFF--TAEMNVLAFERLVL 622

Query: 306 R--VRRALRNGELCLYYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWVEQTDLI 363
              +R+A+   E  L+YQP+V++ +G+V+G E L+RW  P  G+VPP  F+P  E + LI
Sbjct: 623 ENALRQAVERQEFVLHYQPQVDMGSGRVIGAEALVRWLHPELGMVPPARFIPVAEDSGLI 682

Query: 364 VEIGEWVIGQALSQLQAWQRQGQPW-SLSVNIAARHLQRSDFAERLQQLLAAYPAVDPAL 422
             IG+WV+ +A  Q +AWQ  G P   ++VN++A  L++S+  E + +LL     ++   
Sbjct: 683 GAIGDWVLYEACRQNRAWQEAGLPAIPVAVNLSAVQLRQSELHESVAELLRR-TGLESRY 741

Query: 423 LDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQTIKIDQSF 482
           L+LE+ E   +++ +   RCL     +GV  S+DDFGTGYSSLSYLKR P   +KIDQSF
Sbjct: 742 LELELTERTVMEDAEATVRCLRRLDEMGVMLSIDDFGTGYSSLSYLKRFPIDKLKIDQSF 801

Query: 483 VRDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGYCIARPMP 542
           VRDI+ D DD A+  A+I +  +    VIAEG+E+ E   +L   GC+ AQG+   RPMP
Sbjct: 802 VRDIVADADDQAIAVAIISMGHSLRLRVIAEGVETAEQLEILHRHGCDEAQGFHFGRPMP 861

Query: 543 ASDVQAW 549
           A +  A+
Sbjct: 862 ADEFAAY 868



 Score = 33.1 bits (74), Expect = 5e-05
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 9/103 (8%)

Query: 19  DLRGNITYVNQQFCSISGYSREELLGANHRILNSGLHEPTFFVGMWRALVAGRV--WKGE 76
           D   +ITY NQQF +I G   E L   +   L      P        A++ GR   ++GE
Sbjct: 222 DTELHITYSNQQFANIIGVPLERLQDLDMAKLQDQRPLPAL-----AAVLEGRTGRFEGE 276

Query: 77  ICNRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQ 119
               S  G   WV     P++D   GQ+   ++I  D TE+++
Sbjct: 277 Y-RASLSGRQLWVSLVAAPVLDQ-GGQLLGGIAIVEDATERKR 317