Pairwise Alignments

Query, 562 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1515 a.a., sensory box protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  364 bits (935), Expect = e-104
 Identities = 212/548 (38%), Positives = 317/548 (57%), Gaps = 12/548 (2%)

Query: 8    AVDAAAIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLHEPTFFVGMWRAL 67
            +++ A + +  D R  I  VN  F +I+GYS  ++       L     +   F  + + L
Sbjct: 965  SMNEAVVVAGLDYR--IRSVNPAFSAITGYSEGQISDKFLIHLAYSRQQRDLFNSIEQQL 1022

Query: 68   VAGRVWKGEIC--NRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLLHTLQ 125
            +  + W GEI   N+++   L W++   V  +D + G+   +V++  D+TE+++    L+
Sbjct: 1023 LRHKHWAGEIWIRNKARRAILVWLEINQV--ID-VKGETSHFVAVFTDITERKKAEEDLR 1079

Query: 126  WRVGHDVLTGLPNRAYLSDLLNQALAYSRCEGISLAVCMLDLDGFKAVNDGYGHAVGDLL 185
            +    D LTGLPNR    D LN A++ +      +A+  LDLD FK +ND  GH +GDLL
Sbjct: 1080 FLASFDTLTGLPNRTLFQDRLNHAISQAHRSNNIVALLFLDLDRFKHINDSMGHHIGDLL 1139

Query: 186  LVEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAAPCVVREHT 245
            L  VA RL+S +R GD VARL GDEF +IL  V          ++VL+A  AP ++ + +
Sbjct: 1140 LKAVAHRLQSAVREGDTVARLGGDEFTIILEGVAKTKAATLISEKVLKAFQAPFLLDDKS 1199

Query: 246  LSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQELKATH-QTV 304
            L++S SIG++LYP D +D D+L++ AD AMY AK  GRN +  F  ++  E+   H Q  
Sbjct: 1200 LNISTSIGISLYPNDAKDVDSLIKFADTAMYHAKALGRNNFQ-FYTNKLNEMATRHMQLE 1258

Query: 305  ARVRRALRNGELCLYYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWVEQTDLIV 364
              +++A+ + EL L YQPK  LR G + G E LLRWQ    G + P +F+P  E+T +I 
Sbjct: 1259 TGLKQAISHNELSLVYQPKFCLRNGSLTGLEALLRWQHSELGPISPAEFIPLAEETGMIN 1318

Query: 365  EIGEWVIGQALSQLQAWQRQG-QPWSLSVNIAARHLQRSDFAERLQQLLAAYPAVDPALL 423
            +IG WVI Q+  QL  W   G    S++VN++AR L ++D    ++  LA    +    L
Sbjct: 1319 QIGHWVINQSCQQLAEWNELGFSDISMAVNLSARQL-KADIISTIEVALAV-SGLPAKAL 1376

Query: 424  DLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQTIKIDQSFV 483
            +LE+ ES+ + N Q     L   +ALG+  ++DDFGTGYSSLSYLKR P  T+KID+ FV
Sbjct: 1377 ELELTESMIMGNPQESVNILSKLKALGLTIAVDDFGTGYSSLSYLKRFPIDTLKIDREFV 1436

Query: 484  RDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGYCIARPMPA 543
            RDI +D DD A+T A+I LA +    V+AEG+E+ E    L   GC+  QG+ +++P+ A
Sbjct: 1437 RDITNDPDDAAITSAIIALAHSLELNVVAEGVETQEQLNFLALQGCDQVQGFLLSKPLSA 1496

Query: 544  SDVQAWAQ 551
             D Q   Q
Sbjct: 1497 QDCQTLLQ 1504