Pairwise Alignments

Query, 562 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1009 a.a., diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) from Shewanella sp. ANA-3

 Score =  366 bits (939), Expect = e-105
 Identities = 219/544 (40%), Positives = 312/544 (57%), Gaps = 9/544 (1%)

Query: 5   YRAAVDAAAIFSETDLRGNITYVNQQFCSISGYSREELLGANHRILNSGLHEPTFFVGMW 64
           Y  + +A ++  ET   G I  VN  F +I+GYS  E+ G + R+L   L+   F+  M 
Sbjct: 462 YDNSSEAMSVLDET---GVIITVNAAFTAITGYSESEIRGQHIRLLYCDLNGHGFYTEMN 518

Query: 65  RALVAGRVWKGEICNRSKDGSLYWVDSTMVPLVDPLTGQVRKYVSIRFDVTEKRQLLHTL 124
             +     W+GE+  R K+   Y +  T+  + D   GQ  + V++  D+T+K+Q  H +
Sbjct: 519 NEIREKGEWQGEMRQRRKNNEEYVIWLTINTIKDK-DGQPYRRVALFSDITDKKQSEHLI 577

Query: 125 QWRVGHDVLTGLPNRAYLSDLLNQALAYSRCEGISLAVCMLDLDGFKAVNDGYGHAVGDL 184
             +  +D LTGLPNR  L + L   +  +       A+  LDLD FK VND  GHA+GDL
Sbjct: 578 WKQANYDTLTGLPNRRMLLEYLGAEIKSADRNRNHFALMFLDLDYFKEVNDTLGHAMGDL 637

Query: 185 LLVEVAQRLKSILRGGDAVARLSGDEFVLILRDVDDEHQLHAALQRVLRALAAPCVVREH 244
           LL+E A RLKS +R  D VARL GDEF ++L  + D   +    + +LR +A P V+ E 
Sbjct: 638 LLIETASRLKSCVRDADVVARLGGDEFTVVLSSMVDHKGIERVAEHILRRIAEPYVLGEE 697

Query: 245 TLSLSASIGVTLYPQDDEDADTLVRHADQAMYVAKQRGRNRYHLFDVSQEQELKATHQTV 304
           T  +SASIG+TLYP D    + L++HADQAMY AK +GRNR++ F  S ++  K   + +
Sbjct: 698 TAYISASIGITLYPDDATSIEGLLKHADQAMYAAKDQGRNRFNYFTPSMQEYAKYRMRLI 757

Query: 305 ARVRRALRNGELCLYYQPKVNLRTGKVLGFEGLLRWQRPGRGVVPPGDFLPWVEQTDLIV 364
             +R+A+ + E  L+YQP V + TG+VL  E LLRW  P RG V P +F+P  E T LIV
Sbjct: 758 QDLRQAVVSKEFELHYQPIVTMTTGEVLKAEALLRWFHPERGYVSPAEFIPVAEDTGLIV 817

Query: 365 EIGEWVIGQALSQLQAWQRQ-GQPWSLSVNIAARHLQRSDFAERLQQLLAAYPAVD--PA 421
           EIG WV  QA  Q   W++  G    +SVN +   +Q  D    L   L     +D    
Sbjct: 818 EIGNWVFEQAARQSALWRKTFGVDIQISVNKSP--IQFRDEGTLLHNWLELLQKLDVTGT 875

Query: 422 LLDLEIVESVAIDNLQHVSRCLDACRALGVRFSLDDFGTGYSSLSYLKRLPTQTIKIDQS 481
            + +EI E + +D    V+  L A R  GV+ SLDDFGTGYSSL+YLK+     +KIDQS
Sbjct: 876 GVCVEITEGLLLDASMGVTEKLLAYRDAGVQVSLDDFGTGYSSLAYLKKFDIDYLKIDQS 935

Query: 482 FVRDILHDQDDLALTEAVIGLARAFGREVIAEGLESVEHGRVLMGLGCELAQGYCIARPM 541
           F R+I  D+ D  L EA+I +A   G +VIAEG+E+    +VL+  GC+  QGY  ++P+
Sbjct: 936 FTRNIDTDESDQTLCEAIIVMAHKLGMKVIAEGVETEAQRQVLLTAGCDYGQGYLFSKPV 995

Query: 542 PASD 545
            A++
Sbjct: 996 SATE 999