Pairwise Alignments

Query, 643 a.a., Methyl-accepting chemotaxis protein PctB from Pseudomonas putida KT2440

Subject, 554 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  247 bits (630), Expect = 1e-69
 Identities = 169/503 (33%), Positives = 269/503 (53%), Gaps = 26/503 (5%)

Query: 160 AVGGLMVTIATPVKSK-RNGELIGVVGGDVTLDTLVEIINSVDFGGIGHAFLADANGQVI 218
           A+  + ++I T  + K ++GEL         L  L    +++ + G  + F  D  G +I
Sbjct: 59  ALTDIAISIITDFQGKAQSGELSEADAKAKALSAL----DNLRYSGKEYYFTIDRQGMMI 114

Query: 219 VSP-NKDQVMKNLKDIYPGSNLRVAAGMQDVTLDGQDRIISFA---PVAGLPSAQ----- 269
             P  K  V  N+  +   + +++ A M  +T +    ++++    P A  PS +     
Sbjct: 115 QHPFAKKLVDTNVLGMADPNGVKLFAEMIRLTQNSDSALVNYMWNQPDADAPSPKMSVVK 174

Query: 270 ------WYIGLSIDRDKAYAALSQFRTSAIIAMLIAVAAIAGLLGLLIPVLMSPLTTMGR 323
                 W +G  I  D   A   +F    ++  L+    +  LL ++   +  PL     
Sbjct: 175 RFSEWGWIVGTGIYVDDIAAQKQEFTWQYLLVFLLVWGPVMALLLMISRSVTEPLQRTLM 234

Query: 324 AMRDIAEGEGDLTRRLAVQNKDEFGELATSFNRFVERIHASISEVSSATRLVHDLSEKVV 383
           A ++IAEGE +LT RL  + +DE  +++  FN FV RI + +  V  +      LS  + 
Sbjct: 235 AFKNIAEGEANLTLRLEERGRDELSQVSVYFNAFVGRIQSLVISVRDSVDHSRQLSSSLS 294

Query: 384 SASNASIIGSEEQSMRTNSVAAAINELGAATQEIARNAADASQHASGASEQAHGGREVVE 443
           + ++ +   +      T SVAAAIN++ A   E+A NA  A++ A  A  QA     VV 
Sbjct: 295 NVAHQAAHATNSMQQETQSVAAAINQMSATASEVAANAQLAAKSAKNADSQADSTNLVVT 354

Query: 444 EAISAMTALSQRISESCAQIETLNASTDEIGKILDVIKGISQQTNLLALNAAIEAARAGE 503
            A+  +  LS  + E+    + L  S+ EIG+ILDVI GI++QTNLLALNAAIEAARAGE
Sbjct: 355 HAMGNVRQLSSELEETSEIAKALKVSSGEIGQILDVIVGIAEQTNLLALNAAIEAARAGE 414

Query: 504 AGRGFAVVADEVRNLAHRTQESAEEIHRMITSLQVGSREAVHTMNTSQVSSEQTVQVANQ 563
           AGRGFAVVADEVR LA RTQ+S +EI+ +I +++    +   ++  ++  S+ TV    Q
Sbjct: 415 AGRGFAVVADEVRTLASRTQQSTQEINAIIEAIRGAVDKVNASVARARQQSDNTVDETAQ 474

Query: 564 AGERLASVTQRIGEIDGMNQSVATATEEQTAVVESLNLDITQINALNQQGVENL--NETL 621
             + L  + Q IG+I+ MN  +ATAT+EQ+AV+  LN     IN +N+  VENL  +ET+
Sbjct: 475 VMDALGLIKQAIGQINDMNLQIATATDEQSAVIAELN---ENINRINEISVENLSKSETV 531

Query: 622 RH-CDQLAQQAGRLKQLVGSFRI 643
            H  D++A+ + ++ QL+  F++
Sbjct: 532 GHTSDRIAEDSRQMAQLIAVFKV 554