Pairwise Alignments

Query, 643 a.a., Methyl-accepting chemotaxis protein PctB from Pseudomonas putida KT2440

Subject, 695 a.a., methyl-accepting chemotaxis protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  235 bits (600), Expect = 4e-66
 Identities = 175/583 (30%), Positives = 286/583 (49%), Gaps = 73/583 (12%)

Query: 113 TYLGQANGEFTQRPDAQMPAGYDPRQRPWYGAAANAGQTVLTAPYQGAVGGLMVTIATPV 172
           T++   +G F    + QMPAGYDPR+R WY AA +     +T  Y+   G   VT A   
Sbjct: 121 TFVAFDDGGFLAGSEMQMPAGYDPRKRGWYQAAVSGDGIQMTDAYKSTTGEA-VTSAVGR 179

Query: 173 KSKRNGELIGVVGGDVTLDTLVEIINSVDFGGIGHAFLADANGQVIVSPNKD--QVMKNL 230
               +G  IG  G D+ L TL ++I ++  G  G+  L + +G V++S +KD   + K +
Sbjct: 180 IVDASGRTIGAAGIDINLSTLTKVIANIRIGETGYVVLIEDSG-VVLSDSKDPANLFKKV 238

Query: 231 KDIYPG---SNLRVAAGMQDVTLDGQDRIISFAPVAGLPSAQWYIGLSIDRDKAYAALSQ 287
            +I          +  G+ +  L G++R++S   + G     W + + ID D+ +A    
Sbjct: 239 TEIQDNLFRDAFAMREGVFEAKLGGKERLVSV--LTGFEG--WKLVVIIDTDEIFA---- 290

Query: 288 FRTSAIIAMLIAVAAIAGLLGLLIPVLMS-----PLTTMGRAMRDIAEGEGDLTRRLAVQ 342
             + AI+  ++ V A+  L+ ++    +S     P+  + RA  DIA G  +     A+ 
Sbjct: 291 -ESRAIVLKIVGVGAVIALILVVCAWFISRTIANPIDLLVRASGDIAAGNFN-----ALP 344

Query: 343 NKDEF-GELAT---SFNRFVERI-------HASISEVSSATRLVHDLSEK---------- 381
               F GEL T   S  R VE +        A   E    T L     E+          
Sbjct: 345 ESSRFSGELLTLHGSLKRMVESLGELIKTAEAKSQEAEQQTALAKTALEEAEEARKAAEQ 404

Query: 382 ------------------VVSASNASII--------GSEEQSMRTNSVAAAINELGAATQ 415
                             V+SA++  +         G+E QS RT   A A+ E+ A   
Sbjct: 405 AKRNGMLQAARDLQGIVEVISAASEELAAQIEQASRGAEFQSQRTGETATAMEEMNATVL 464

Query: 416 EIARNAADASQHASGASEQAHGGREVVEEAISAMTALSQRISESCAQIETLNASTDEIGK 475
           E+AR+A  A++ ++ A + A  G  +V + +  + +++Q        ++ L    ++IG+
Sbjct: 465 EVARSAGSAAETSANARDNAEVGAGIVRDMVKGINSVNQYAERLQQDMDVLGRRAEDIGR 524

Query: 476 ILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLAHRTQESAEEIHRMITS 535
           I++VI  I+ QTNLLALNAAIEAARAGEAGRGFAVVADEVR LA +T  + +E+   I  
Sbjct: 525 IINVINDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMAATKEVSDAIGG 584

Query: 536 LQVGSREAVHTMNTSQVSSEQTVQVANQAGERLASVTQRIGEIDGMNQSVATATEEQTAV 595
           +Q G+RE+   +  +         +A +AG  LA++ Q   +     +S+ATA+EEQ+A 
Sbjct: 585 IQSGTRESFEQVQQTVKEVVTVTTMAEKAGNSLATIVQLSDKSSDQVRSIATASEEQSAA 644

Query: 596 VESLNLDITQINALNQQGVENLNETLRHCDQLAQQAGRLKQLV 638
            E +   + +IN +  +  + + ++ +   +LA+QA RLK ++
Sbjct: 645 SEEIAHAVDEINRITAETSDAMRQSAQAVTELAEQAQRLKNII 687



 Score = 40.4 bits (93), Expect = 3e-07
 Identities = 35/164 (21%), Positives = 66/164 (40%), Gaps = 13/164 (7%)

Query: 293 IIAMLIAVAAIAGLLGLLIPVLMSPLTTMGRAMRDIAEGEGDLTRRLAVQNK---DEFGE 349
           II ++  +A    LL L   +  +     GR    +A+    L  +     K   D  G 
Sbjct: 525 IINVINDIADQTNLLALNAAIEAARAGEAGRGFAVVADEVRKLAEKTMAATKEVSDAIGG 584

Query: 350 LATSFNRFVERIHASISEVSSATRLVH----------DLSEKVVSASNASIIGSEEQSMR 399
           + +      E++  ++ EV + T +             LS+K      +    SEEQS  
Sbjct: 585 IQSGTRESFEQVQQTVKEVVTVTTMAEKAGNSLATIVQLSDKSSDQVRSIATASEEQSAA 644

Query: 400 TNSVAAAINELGAATQEIARNAADASQHASGASEQAHGGREVVE 443
           +  +A A++E+   T E +     ++Q  +  +EQA   + ++E
Sbjct: 645 SEEIAHAVDEINRITAETSDAMRQSAQAVTELAEQAQRLKNIIE 688