Pairwise Alignments

Query, 643 a.a., Methyl-accepting chemotaxis protein PctB from Pseudomonas putida KT2440

Subject, 543 a.a., methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella sp. ANA-3

 Score =  226 bits (577), Expect = 2e-63
 Identities = 128/368 (34%), Positives = 216/368 (58%), Gaps = 10/368 (2%)

Query: 276 IDRDKAYAALSQFRTSAIIAMLIAVAAIAGLLGLLIP-VLMSPLTTMGRAMRDIAEGEGD 334
           +D   +  A +Q + S  IA L+A+ A+  ++    P ++++ +  +   + DI +G+G+
Sbjct: 176 LDLQASEQATTQTQISVTIATLVAIVAL--VIAYFGPKIIVNAIRDITDRINDIVDGDGN 233

Query: 335 LTRRLAVQNKDEFGELATSFNRFVERIHASISEVSSATRLVHDLSEKVVSASNASIIGSE 394
           LT+R+ +  +DE GELA +FN FV ++   +  + S T+ V    E + + S  +I  S 
Sbjct: 234 LTQRIPITRQDEIGELANAFNLFVAQLQQMVIAIISQTKDVSQTVENLATKSTTTIGISY 293

Query: 395 EQSMRTNSVAAAINELGAATQEIARNAADASQHASGASEQAHGGREVVEEAISAMTALSQ 454
           EQ    +++  A+NE+ AA +E+A NA   +   +  ++Q   G+ ++ ++++ +  LS+
Sbjct: 294 EQEQFVDTIVTAVNEMSAAVREVASNALHTATEITKVNDQTIEGKNILTQSVNHIQQLSE 353

Query: 455 RISESCAQIETLNASTDEIGKILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADE 514
            + ++ A IE L+ ++  I  +LDVI+ I++QTNLLALNAAIEAARAGE GRGFAVVADE
Sbjct: 354 SVKQAVAVIEKLSVNSANIASVLDVIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADE 413

Query: 515 VRNLAHRTQESAEEIHRMITSLQVGSREAVHTMNTSQVSSEQTVQVANQAGERLASVTQR 574
           VR LA RT+ S ++I RMI  LQ G  +AV ++ +    +  TV +A+Q  + L  +   
Sbjct: 414 VRTLASRTETSTQDIQRMIEELQRGVNDAVKSIESGASLTNSTVTLASQTQDALDEILNS 473

Query: 575 IGEIDGMNQSVATATEEQTAVVESLNLDITQI-------NALNQQGVENLNETLRHCDQL 627
             ++  M+   ATATEEQT V E +N ++T++       N + Q+  + +  T   C  L
Sbjct: 474 TSKVSEMSTQTATATEEQTHVTEEINRNLTELSDKTRYCNTVIQETQQIVVNTQTICSNL 533

Query: 628 AQQAGRLK 635
            ++  R K
Sbjct: 534 QKEVSRFK 541



 Score = 34.3 bits (77), Expect = 1e-05
 Identities = 53/299 (17%), Positives = 112/299 (37%), Gaps = 33/299 (11%)

Query: 342 QNKDEFGELATSFNRFVERIHASISEVSSATRLVHDLSEKVVSA--SNASIIGSEEQSMR 399
           Q +D  GE        +E I  S S   +   L +  S +V++A  +N   +  +    +
Sbjct: 92  QARDRMGEFKNYLQDHLEVIK-STSGFEAQFSLWYQASSEVINAVKNNDFELARQLHENK 150

Query: 400 TNSVAAAINELGAATQEIARNAADASQHASGASEQAHGGREVVEEAISAMTALSQRISES 459
           +     A+  +  A  E A N     +    ASEQA    ++    I+ + A+   +   
Sbjct: 151 SKKEFKALRSIYNAAGEAADNRV--KELDLQASEQATTQTQI-SVTIATLVAIVALVIAY 207

Query: 460 CAQIETLNASTDEIGKILDVIKGISQQTNLLALNAAIEAARAGEAGRGFAVVADEVRNLA 519
                 +NA  D   +I D++ G    T  + +                    DE+  LA
Sbjct: 208 FGPKIIVNAIRDITDRINDIVDGDGNLTQRIPITRQ-----------------DEIGELA 250

Query: 520 HRTQESAEEIHRMITSLQVGSREAVHTMNTSQVSSEQTVQVANQAGERLASVTQRIGEID 579
           +       ++ +M+ ++   +++   T+      S  T+ ++ +  + + ++   + E+ 
Sbjct: 251 NAFNLFVAQLQQMVIAIISQTKDVSQTVENLATKSTTTIGISYEQEQFVDTIVTAVNEMS 310

Query: 580 GMNQSVATATEEQTAVVESLNLDITQINALNQQGVENLNETLRHCDQLAQQAGRLKQLV 638
              + VA+                T+I  +N Q +E  N   +  + + Q +  +KQ V
Sbjct: 311 AAVREVASNALHTA----------TEITKVNDQTIEGKNILTQSVNHIQQLSESVKQAV 359