Pairwise Alignments

Query, 330 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 330 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas fluorescens FW300-N2E2

 Score =  143 bits (360), Expect = 7e-39
 Identities = 107/329 (32%), Positives = 163/329 (49%), Gaps = 25/329 (7%)

Query: 13  IGLLLYPGVQRAAVHGLADLFLVANRVAAELGAVELPHIRVSCWQADETGQLLPASDNSA 72
           + +L +  VQ   V G   +F  AN +A + G + LP+          T  ++     + 
Sbjct: 8   VHVLAFANVQVLDVTGPLQVFASANDLARQQG-LPLPY----------TPTVIAVGGGAV 56

Query: 73  VTVPGLRVLIIPPSLESAPQAELL------ERHRAPLCLL----HG-RGTVLASVCIGVF 121
           ++  GL ++  P   E +    +       E  + P  +     HG R   +ASVC G F
Sbjct: 57  MSSAGLALMAEPLPSEGSDTLLIAGGWGVYEAAKDPALVAWVKEHGLRSRRVASVCTGAF 116

Query: 122 FIAASGLLDGRPACTHWNYVHALAQRFPRVRVEAQQPLLDDGDIVTSAGLMAWTDLGLRL 181
            +AASG LDGR   THW     LA++ P++RVE     ++DG + TSAG+ A  DL L L
Sbjct: 117 LLAASGWLDGRRVVTHWTRCEQLAEQHPQLRVEPNPIFINDGPVWTSAGVTAGIDLALAL 176

Query: 182 LERFLGTTVAQETARYLAVDPVAAPLPGAVFNPRLDHGDEAVL--KVQHWLQGNGGQDAD 239
           +E  LG  VA E AR+L V  +  P   + F+  L    +      +  W+  N  +D  
Sbjct: 177 VEEDLGRAVALEVARHLVVF-LKRPGGQSQFSVTLSLQKQGSRFDDLHAWIAENLTRDLG 235

Query: 240 LATMAACAGLEARTFLRRFRAATGLRPTEYCQQVRVGRACRLLEFTRRTVEQIAWGVGYQ 299
           L+++AA  G+  R+F+R +RA TG  P    + +RV  A RLL  T  +++++A   G+ 
Sbjct: 236 LSSLAAEVGMSERSFVRHYRADTGQTPARAVELIRVETARRLLSDTAVSIKRVAVQCGFG 295

Query: 300 DPGAFRKVFQRVIGLTPSDYRRRFAVSGQ 328
                R+ F R +G+TP  YR RFAVS Q
Sbjct: 296 SEETLRRSFLRAMGVTPQAYRERFAVSPQ 324