Pairwise Alignments

Query, 330 a.a., Transcriptional regulator, AraC family from Pseudomonas putida KT2440

Subject, 329 a.a., Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain from Pseudomonas stutzeri RCH2

 Score =  143 bits (361), Expect = 5e-39
 Identities = 77/218 (35%), Positives = 124/218 (56%), Gaps = 1/218 (0%)

Query: 107 HGRGTVLASVCIGVFFIAASGLLDGRPACTHWNYVHALAQRFPRVRVEAQQPLLDDGDIV 166
           H  G+V+     GVF++A +GLL+GR A THW + +  A RFP V   A + L D  ++ 
Sbjct: 108 HAAGSVICGEATGVFWMAQAGLLEGREATTHWRFANDFAARFPGVAFSADKHLTDSDNLY 167

Query: 167 TSAGLMAWTDLGLRLLERFLGTTVAQETARYLAVDPVAAPLPGAV-FNPRLDHGDEAVLK 225
            + G  +  DL + L+ERF G  VAQ  AR +  +   +  PG + F  +  H D  +L+
Sbjct: 168 CAGGTTSACDLYMYLVERFCGAHVAQGMARDVLFELQRSYSPGRLGFGGQKLHLDTRILQ 227

Query: 226 VQHWLQGNGGQDADLATMAACAGLEARTFLRRFRAATGLRPTEYCQQVRVGRACRLLEFT 285
           +Q WL+ N  +      +A   G+  R F+RRF AATG +P  Y Q++R+  A  LL  T
Sbjct: 228 IQEWLEANFAEKFRFEDVARQHGMSIRNFMRRFHAATGDKPLHYLQRLRIETAKSLLATT 287

Query: 286 RRTVEQIAWGVGYQDPGAFRKVFQRVIGLTPSDYRRRF 323
            ++++ I++ VGY D   F ++F++   L+P+ YR+++
Sbjct: 288 GKSIKTISYEVGYDDASFFARLFRQHTELSPNHYRQKY 325