Pairwise Alignments

Query, 362 a.a., Putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  137 bits (344), Expect = 6e-37
 Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 22/331 (6%)

Query: 7   SLCLLSLVLALPLQAEEKVVNLYSWADYVAPQTLQRFEQETGYKVRYDTFDTPEVLETKL 66
           S C LSL L+    AE+K +   +W  Y+    L++F +ETG KV Y T+++ E L  KL
Sbjct: 11  SACALSL-LSGTAAAEDKELVFMNWGPYINSGILEQFTKETGIKVIYSTYESNETLYAKL 69

Query: 67  LTGGSGYDVVVPSSTVLARALKAHALQPLDAQAMPGYGNLDKDLLGKLAEVDPGNRHAVP 126
            T   GYD+VVPS+  +A+      LQ +D   +  + NLD + L K    DP N +++P
Sbjct: 70  KTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSNYLDK--PYDPNNDYSIP 127

Query: 127 YTWGTLGLGVNVEAVRQRLGDVPLDSLDLLFKPEYATRLKGCGIALPDSPQEVIGVALNY 186
           +     GL VN +            S   L+KPE    LKG  + L D  +EV  +AL  
Sbjct: 128 HVVAITGLAVNTDMYDPN----DFQSWGDLWKPE----LKG-QLMLMDDTREVFHIALRK 178

Query: 187 LGKDPYSQNKDDLAAAQNLLSQLQPSISYVANGRQINDLANGSVCLALTYNGDAAMAADQ 246
           LG    S +   +  A   L +L P++    +        +G V L + +NG AA     
Sbjct: 179 LGYSGNSTDDKQIDEAYAELQKLMPNVLVFNSDNPAAPYLSGEVGLGMLWNGSAA----A 234

Query: 247 ARRAGKPFEVIYRIPREGTLVWQDNLVIPKDAPHPEAARAFIAFMLKPESVAALTNTLFF 306
           A++ G P ++++  P+EG + W DN  I   A + +AA   I F+L+PE    ++    +
Sbjct: 235 AQKEGLPIKLVF--PKEGGIGWVDNFAISSGAKNVDAAHKMIDFLLRPEIAEQISRDTGY 292

Query: 307 ANANQAATPLVDEAVRNDPDIYPSAEVRQRL 337
               +A+    ++  ++   ++PS E   R+
Sbjct: 293 LTGVKAS----NDKFQDVAPLFPSQEDLDRV 319