Pairwise Alignments

Query, 362 a.a., Putrescine-binding periplasmic protein from Pseudomonas putida KT2440

Subject, 449 a.a., spermidine/putrescine ABC transporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  132 bits (331), Expect = 2e-35
 Identities = 102/335 (30%), Positives = 164/335 (48%), Gaps = 39/335 (11%)

Query: 20  QAEEKVVNLYSWADYVAPQTLQRFE----QETGYKVR--YDTFDTPEVLETKLLTGGSGY 73
           +  E+V+ +Y+WADY+    L+ F+    ++TG  +R  Y TFD  E++ TK+  G   +
Sbjct: 26  EPRERVLKIYNWADYIGEGVLEDFQAYYKEQTGEDIRIVYQTFDINEIMLTKIEKGHEDF 85

Query: 74  DVVVPSSTVLARALKAHALQPLDA--QAMPGYGN----LDKDLLGKLAEV-DPGNRHAVP 126
           DVV PS  ++ R LK H L P+D      P Y N      ++ + KL++  +  +R+AV 
Sbjct: 86  DVVCPSEYIIERMLKKHLLLPIDTTFAHSPNYMNNVSPFIREQINKLSQPGEEASRYAVC 145

Query: 127 YTWGTLGLGVNVEAVRQRLGDVPLDSLDLLFKPEYATRLKGCGIALPDSPQEVIGVALNY 186
           Y WGT G+  N    R  + D    S + L+  +YA +     I + DS ++  G A+ Y
Sbjct: 146 YMWGTAGILYN----RAYVPDSDAFSWECLWDKKYAGK-----ILMKDSYRDAYGTAVIY 196

Query: 187 LGKDPYSQNK---DDL---------AAAQNLLSQLQPSISYVANGRQINDLANGSVCLAL 234
                  +     +DL           A+  L  ++P+I+          +      L +
Sbjct: 197 AHAKELEEGTVTVEDLMNDYSPRAMEVAEKYLKAMKPNIAGWEADFGKEMMTKNKAWLNM 256

Query: 235 TYNGDAAMAADQARRAGKPFEVIYRIPREGTLVWQDNLVIPKDAPHPEAARAFIAFMLKP 294
           T++GDA  A ++A   G   ++ Y +P+EG+ +W D  VIPK A +P AA  FI FM +P
Sbjct: 257 TWSGDAIWAIEEANAVG--VDLDYVVPKEGSNIWYDGWVIPKYAKNPVAASYFINFMCRP 314

Query: 295 ESVAALTNTLFFANANQAATP-LVDEAVRNDPDIY 328
           +   AL N  F    +  ATP +++E V    D Y
Sbjct: 315 D--IALRNMDFCGYVSSIATPEILEEKVDTTLDYY 347