Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 324 a.a., Transmembrane sensor from Pseudomonas fluorescens FW300-N2E2

 Score = 96.3 bits (238), Expect = 1e-24
 Identities = 82/262 (31%), Positives = 125/262 (47%), Gaps = 33/262 (12%)

Query: 143 QRLGVSESMVAKYIGQALRHCRGRLKQAGVA-ASVVLLV--AAVAGWQQAPI--LLADYH 197
           QR  V+       + Q+    R R+++ G   ASV+  +  A  AG +  P+   LAD  
Sbjct: 57  QRFSVANGPARAALLQSRVSIRRRIRKVGSGLASVIAAIGLALFAGDRYLPLDYWLADQR 116

Query: 198 TAVGERQVITLTDGTRVTLNSASALSVAFSEHERRVVLDAGEALFETA-DDSRPFVVETA 256
           TA GE++ + L DGT + LN+ SAL V F + +RR+VL  GE L ET  DD RPF+VET 
Sbjct: 117 TATGEQRTLRLDDGTLINLNTHSALDVRFDDKQRRIVLQEGEILVETGHDDPRPFIVETR 176

Query: 257 GARVQGNAATFSVQRDGH---------VVLARGEAKVGEHEL---------------AVA 292
             R++     F V+R+            V A  +A   E  L                +A
Sbjct: 177 EGRLRALGTRFLVKREDEGTRLSVLKSAVAAHPQATDQEQILREGQQVLMRRDGLGPTLA 236

Query: 293 ADAGTQMAWQRGKLIFNGKPLGQVLTELERYRHGRIVLSDSKLAAMEVSGVFDLDEPEAL 352
            + G   AW RG L+ +   L  ++ EL RYR G + + + ++A + ++G F L + +  
Sbjct: 237 LNPGAD-AWTRGMLVVDNARLEDLVHELGRYRRGYLGV-EPQVADLRITGSFPLHDTDLA 294

Query: 353 LRTLEQRYGLKVT-YLPWLAVV 373
           L  L     ++V  +  W  VV
Sbjct: 295 LTALLPTLPVQVEHHTRWWVVV 316